Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_K12
(595 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99437|VATO_HUMAN Vacuolar ATP synthase 21 kDa proteolip... 218 9e-57
sp|Q91V37|VATO_MOUSE Vacuolar ATP synthase 21 kDa proteolip... 217 2e-56
sp|P23968|VATO_YEAST Vacuolar ATP synthase 22 kDa proteolip... 167 2e-41
sp|O14046|VATO_SCHPO Probable vacuolar ATP synthase 20 kDa ... 164 2e-40
sp|P59229|VATL4_ARATH Vacuolar ATP synthase 16 kDa proteoli... 75 9e-14
sp|P68161|VATL_MESCR Vacuolar ATP synthase 16 kDa proteolip... 75 1e-13
sp|P59228|VATL2_ARATH Vacuolar ATP synthase 16 kDa proteoli... 75 1e-13
sp|P59227|VATL1_ARATH Vacuolar ATP synthase 16 kDa proteoli... 75 1e-13
sp|Q43434|VATL_GOSHI Vacuolar ATP synthase 16 kDa proteolip... 75 1e-13
sp|O24011|VATL_LYCES Vacuolar ATP synthase 16 kDa proteolip... 75 1e-13
>sp|Q99437|VATO_HUMAN Vacuolar ATP synthase 21 kDa proteolipid subunit (HATPL)
Length = 205
Score = 218 bits (555), Expect = 9e-57
Identities = 118/176 (67%), Positives = 132/176 (75%), Gaps = 3/176 (1%)
Frame = +3
Query: 3 RFDIGWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVS 182
RFD+ WFL ETSP++W+N+GIGL ISLSV+GAA GIY TGSSI+G GVK PRI+TKNLVS
Sbjct: 34 RFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVS 93
Query: 183 IIFCEAVAIYGIIMAIVISQNIKSF---DSKIASFRVLQINHEGGFRMFGSGLTVGLSNL 353
IIFCEAVAIYGIIMAIVIS + F D K R N+ G+ MFG+GLTVGLSNL
Sbjct: 94 IIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHR----NYHAGYSMFGAGLTVGLSNL 149
Query: 354 XXXXXXXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGILQVAGTKMGD 521
AALAD+ N SLFVKILIVEIFGSAIGLFGVIV ILQ + KMGD
Sbjct: 150 FCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 205
>sp|Q91V37|VATO_MOUSE Vacuolar ATP synthase 21 kDa proteolipid subunit (23-kDa subunit of
V-ATPase)
Length = 205
Score = 217 bits (552), Expect = 2e-56
Identities = 116/173 (67%), Positives = 131/173 (75%)
Frame = +3
Query: 3 RFDIGWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVS 182
RFD+ WFL ETSP++W+N+GIGL ISLSV+GAA GIY TGSSI+G GVK PRI+TKNLVS
Sbjct: 34 RFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVS 93
Query: 183 IIFCEAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXX 362
IIFCEAVAIYGIIMAIVIS + F S + N+ G+ MFG+GLTVGLSNL
Sbjct: 94 IIFCEAVAIYGIIMAIVISNMAEPF-SATEPKAIGHRNYHAGYSMFGAGLTVGLSNLFCG 152
Query: 363 XXXXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGILQVAGTKMGD 521
AALAD+ N SLFVKILIVEIFGSAIGLFGVIV ILQ + KMGD
Sbjct: 153 VCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 205
>sp|P23968|VATO_YEAST Vacuolar ATP synthase 22 kDa proteolipid subunit
Length = 213
Score = 167 bits (423), Expect = 2e-41
Identities = 86/162 (53%), Positives = 115/162 (70%)
Frame = +3
Query: 9 DIGWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSII 188
+ G FL TSPY+WAN+GI LC+ LSV+GAA GI+ TGSS++GAGV+ PRI TKNL+SII
Sbjct: 46 NFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLISII 105
Query: 189 FCEAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXX 368
FCE VAIYG+I+AIV S + A + N G+ +F +G+TVG SNL
Sbjct: 106 FCEVVAIYGLIIAIVFSSKL---TVATAENMYSKSNLYTGYSLFWAGITVGASNLICGIA 162
Query: 369 XXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 494
AA++D+A+++LFVKIL++EIFGS +GL G+IVG+L
Sbjct: 163 VGITGATAAISDAADSALFVKILVIEIFGSILGLLGLIVGLL 204
>sp|O14046|VATO_SCHPO Probable vacuolar ATP synthase 20 kDa proteolipid subunit
Length = 199
Score = 164 bits (415), Expect = 2e-40
Identities = 87/163 (53%), Positives = 111/163 (68%)
Frame = +3
Query: 6 FDIGWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSI 185
FD G FL +TSPY W +GI C++ ++GAA GI+ G+SILG VK PRI+TKNL+SI
Sbjct: 31 FDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISI 90
Query: 186 IFCEAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXX 365
IFCE VAIY +I+AIV S I D A F + ++ GF +F G+TVGL NL
Sbjct: 91 IFCEVVAIYSLIIAIVFSAKIN--DINPAGF-YTKSHYYTGFALFWGGITVGLCNLICGV 147
Query: 366 XXXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 494
AALAD+ +ASLFVK+L+VEIFGS +GLFG+IVG+L
Sbjct: 148 CVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLL 190
Score = 34.3 bits (77), Expect = 0.24
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +3
Query: 48 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 227
W I +GLC + G +GI TGSS A + + K LV IF + ++G+I+
Sbjct: 133 WGGITVGLCNL--ICGVCVGI--TGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVG 188
Query: 228 IVISQNIKSF 257
++I F
Sbjct: 189 LLIGGKASDF 198
>sp|P59229|VATL4_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (V-ATPase 16 kDa
proteolipid subunit 4)
Length = 166
Score = 75.5 bits (184), Expect = 9e-14
Identities = 46/160 (28%), Positives = 80/160 (50%)
Frame = +3
Query: 15 GWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFC 194
G+ ET+P+ + +G + S +GAA G +G + GV P + K++V ++
Sbjct: 5 GFSGDETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 63
Query: 195 EAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXX 374
+ IYG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 64 GVLGIYGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIG 115
Query: 375 XXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 494
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 116 IVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGII 155
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 48 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 227
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 94 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 153
Query: 228 IVIS 239
I++S
Sbjct: 154 IILS 157
>sp|P68161|VATL_MESCR Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P68162|VATL_BETVU Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 165
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +3
Query: 30 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 209
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 210 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 389
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 390 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 494
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 48 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 227
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 228 IVIS 239
I++S
Sbjct: 153 IILS 156
>sp|P59228|VATL2_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (V-ATPase 16 kDa
proteolipid subunit 2)
Length = 165
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +3
Query: 30 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 209
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 210 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 389
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 390 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 494
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 48 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 227
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 228 IVIS 239
I++S
Sbjct: 153 IILS 156
>sp|P59227|VATL1_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (V-ATPase 16
kDa proteolipid subunit 1/3/5)
Length = 164
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +3
Query: 30 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 209
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 210 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 389
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 67 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 118
Query: 390 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 494
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 119 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 153
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 48 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 227
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 92 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 151
Query: 228 IVIS 239
I++S
Sbjct: 152 IILS 155
>sp|Q43434|VATL_GOSHI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 165
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +3
Query: 30 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 209
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 210 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 389
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 390 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 494
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 48 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 227
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 228 IVIS 239
I++S
Sbjct: 153 IILS 156
>sp|O24011|VATL_LYCES Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 164
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +3
Query: 30 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 209
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 210 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 389
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 67 YGLIIAVIISTGI---NPKTKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 118
Query: 390 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 494
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 119 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 153
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 48 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 227
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 92 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 151
Query: 228 IVIS 239
I++S
Sbjct: 152 IILS 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,746,048
Number of Sequences: 369166
Number of extensions: 1206440
Number of successful extensions: 3255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3195
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)