Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_K06
(823 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATP... 385 e-107
sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATP... 384 e-106
sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATP... 380 e-105
sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brai... 358 1e-98
sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain ... 358 1e-98
sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brai... 358 1e-98
sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidn... 357 2e-98
sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidn... 353 3e-97
sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit... 338 1e-92
sp|P16140|VATB_YEAST Vacuolar ATP synthase subunit B (V-ATP... 321 1e-87
>sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
Length = 490
Score = 385 bits (990), Expect = e-107
Identities = 195/228 (85%), Positives = 211/228 (92%)
Frame = +3
Query: 3 NSHEALKVHQLAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQR 182
N+ +A + H LAV+R++ISQPRLTYKTVSGVNGPLVILD VKFPK+AEIV+L LADGT R
Sbjct: 2 NAQQAQREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTVR 61
Query: 183 SGQVLEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGG 362
SGQVLEVSGSKAVVQVFEGTSGIDAK+T CEFTGDILRTPVSEDMLGR+FNGSGKP D G
Sbjct: 62 SGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKG 121
Query: 363 PEIMAEDFLDIQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEI 542
P I+AEDFLDIQGQ INP SRIYPEEMIQTGIS+IDVMNSIARGQKIPIFSA+GLPHNEI
Sbjct: 122 PPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEI 181
Query: 543 AAQICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQ 686
AAQICRQAGLV+LP KSVLDDH DNFAIVFAAMGVNMETARFF + F+
Sbjct: 182 AAQICRQAGLVKLPGKSVLDDHTDNFAIVFAAMGVNMETARFFKQDFE 229
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +1
Query: 676 EDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
+DF+E+GSMENVCLFLNLANDPTIERIITPR+ALT AE+LAYQCEKHVL
Sbjct: 226 QDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVL 274
>sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 384 bits (985), Expect = e-106
Identities = 193/225 (85%), Positives = 210/225 (93%)
Frame = +3
Query: 12 EALKVHQLAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQ 191
+A K H LAV+R++ISQPRLTYKTVSGVNGPLVILD VKFPK++EIV+L LADGT RSGQ
Sbjct: 9 QANKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTHRSGQ 68
Query: 192 VLEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEI 371
VLEVSGSKAVVQVFEGTSGIDAK+T CEFTGDILRTPVSEDMLGR+FNGSGKP D GP I
Sbjct: 69 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 128
Query: 372 MAEDFLDIQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQ 551
+AEDFLDIQGQ INP SRIYPEEMIQTGIS+IDVMNSIARGQKIPIFSA+GLPHNEIAAQ
Sbjct: 129 LAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 188
Query: 552 ICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQ 686
ICRQAGLV++P KSVLDDH+DNFAIVFAAMGVNMETARFF + F+
Sbjct: 189 ICRQAGLVKIPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFE 233
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +1
Query: 676 EDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
+DF+E+GSMENVCLFLNLANDPTIERIITPR+ALT AE+LAYQCEKHVL
Sbjct: 230 QDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVL 278
>sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 380 bits (977), Expect = e-105
Identities = 191/225 (84%), Positives = 210/225 (93%)
Frame = +3
Query: 12 EALKVHQLAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQ 191
+A K H LAV+R++ISQPRL YKTVSGVNGPLVILD+VKFPK++EIV+L LADGT RSGQ
Sbjct: 9 QAAKEHVLAVSRDFISQPRLIYKTVSGVNGPLVILDDVKFPKFSEIVQLRLADGTLRSGQ 68
Query: 192 VLEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEI 371
VLEVSG+KAVVQVFEGTSGIDAK+T CEFTGDILRTPVSEDMLGR+FNGSGKP D GP I
Sbjct: 69 VLEVSGTKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 128
Query: 372 MAEDFLDIQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQ 551
+AEDFLDIQGQ INP SRIYPEEMIQTGIS+IDVMNSIARGQKIPIFSA+GLPHNEIAAQ
Sbjct: 129 LAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 188
Query: 552 ICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQ 686
ICRQAGLV++P KSVLDDH+DNFAIVFAAMGVNMETARFF + F+
Sbjct: 189 ICRQAGLVKIPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFE 233
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +1
Query: 676 EDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
+DF+E+GSMENVCLFLNLANDPTIERIITPR+ALT AE+LAYQCEKHVL
Sbjct: 230 QDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVL 278
>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 358 bits (919), Expect = 1e-98
Identities = 182/219 (83%), Positives = 199/219 (90%)
Frame = +3
Query: 33 LAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQVLEVSGS 212
LAV+RNY+SQPRLTYKTVSGVNGPLVILD+VKFP+YAEIV LTL DGT+RSGQVLEVSGS
Sbjct: 33 LAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGS 92
Query: 213 KAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLD 392
KAVVQVFEGTSGIDAK T+CEFTGDILRTPVSEDMLGR+FNGSGKP D GP ++AEDFLD
Sbjct: 93 KAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLD 152
Query: 393 IQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQICRQAGL 572
I GQ INP RIYPEEMIQTGIS+ID MNSIARGQKIPIFSA+GLPHNEIAAQICRQAGL
Sbjct: 153 IMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGL 212
Query: 573 VRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQR 689
V+ K V+D ++NFAIVFAAMGVNMETARFF F++
Sbjct: 213 VK-KSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEQ 250
Score = 93.2 bits (230), Expect = 8e-19
Identities = 42/48 (87%), Positives = 48/48 (100%)
Frame = +1
Query: 679 DFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
DF+++GSM+NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVL
Sbjct: 247 DFEQNGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVL 294
>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 358 bits (918), Expect = 1e-98
Identities = 182/218 (83%), Positives = 198/218 (90%)
Frame = +3
Query: 33 LAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQVLEVSGS 212
LAV+RNY+SQPRLTYKTVSGVNGPLVILD+VKFP+YAEIV LTL DGT+RSGQVLEVSGS
Sbjct: 33 LAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGS 92
Query: 213 KAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLD 392
KAVVQVFEGTSGIDAK T+CEFTGDILRTPVSEDMLGR+FNGSGKP D GP ++AEDFLD
Sbjct: 93 KAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLD 152
Query: 393 IQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQICRQAGL 572
I GQ INP RIYPEEMIQTGIS+ID MNSIARGQKIPIFSA+GLPHNEIAAQICRQAGL
Sbjct: 153 IMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGL 212
Query: 573 VRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQ 686
V+ K V+D ++NFAIVFAAMGVNMETARFF F+
Sbjct: 213 VK-KSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFE 249
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/48 (89%), Positives = 48/48 (100%)
Frame = +1
Query: 679 DFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
DF+E+GSM+NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVL
Sbjct: 247 DFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVL 294
>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit) (HO57)
Length = 511
Score = 358 bits (918), Expect = 1e-98
Identities = 182/218 (83%), Positives = 198/218 (90%)
Frame = +3
Query: 33 LAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQVLEVSGS 212
LAV+RNY+SQPRLTYKTVSGVNGPLVILD+VKFP+YAEIV LTL DGT+RSGQVLEVSGS
Sbjct: 33 LAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGS 92
Query: 213 KAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDFLD 392
KAVVQVFEGTSGIDAK T+CEFTGDILRTPVSEDMLGR+FNGSGKP D GP ++AEDFLD
Sbjct: 93 KAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLD 152
Query: 393 IQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQICRQAGL 572
I GQ INP RIYPEEMIQTGIS+ID MNSIARGQKIPIFSA+GLPHNEIAAQICRQAGL
Sbjct: 153 IMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGL 212
Query: 573 VRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQ 686
V+ K V+D ++NFAIVFAAMGVNMETARFF F+
Sbjct: 213 VK-KSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFE 249
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/48 (89%), Positives = 48/48 (100%)
Frame = +1
Query: 679 DFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
DF+E+GSM+NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVL
Sbjct: 247 DFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVL 294
>sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 357 bits (916), Expect = 2e-98
Identities = 181/230 (78%), Positives = 198/230 (86%)
Frame = +3
Query: 15 ALKVHQLAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQV 194
A + H AVTRNYI+ PR+TY+TV VNGPLV+LD VKF +YAEIV TL DGTQRSGQV
Sbjct: 21 AAREHMQAVTRNYITHPRVTYRTVCSVNGPLVVLDRVKFAQYAEIVHFTLPDGTQRSGQV 80
Query: 195 LEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEIM 374
LEV+G+KA+VQVFEGTSGIDA+ TTCEFTGDILRTPVSEDMLGR+FNGSGKP D GP +M
Sbjct: 81 LEVAGTKAIVQVFEGTSGIDARKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVM 140
Query: 375 AEDFLDIQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQI 554
AEDFLDI GQ INP SRIYPEEMIQTGIS IDVMNSIARGQKIPIFSA+GLPHNEIAAQI
Sbjct: 141 AEDFLDINGQPINPHSRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 200
Query: 555 CRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQRTWING 704
CRQAGLV+ K+VLD H DNFAIVFAAMGVNMETARFF F++ G
Sbjct: 201 CRQAGLVK-KSKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMG 249
Score = 90.5 bits (223), Expect = 5e-18
Identities = 41/48 (85%), Positives = 47/48 (97%)
Frame = +1
Query: 679 DFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
DF+++G+M NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVL
Sbjct: 241 DFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVL 288
>sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 353 bits (906), Expect = 3e-97
Identities = 179/230 (77%), Positives = 197/230 (85%)
Frame = +3
Query: 15 ALKVHQLAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQV 194
A + H AVTRNYI+ PR+TY+TV VNGPLV+LD VKF +YAEIV TL +GTQRSGQV
Sbjct: 21 AAREHVQAVTRNYITHPRITYRTVCSVNGPLVVLDQVKFAQYAEIVNFTLPNGTQRSGQV 80
Query: 195 LEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEIM 374
LEVSG+KA+VQVFEGTSGIDA+ TTCEFTGDILRTPVSEDMLGR+FNGSGKP D GP +M
Sbjct: 81 LEVSGTKAIVQVFEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVM 140
Query: 375 AEDFLDIQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQI 554
AEDFLDI GQ INP RIYPEEMI+TGIS IDVMNSIARGQKIPIFSA+GLPHNEIAAQI
Sbjct: 141 AEDFLDINGQPINPHDRIYPEEMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 200
Query: 555 CRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQRTWING 704
CRQAGLV+ K+VLD H DNFAIVFAAMGVNMETARFF F++ G
Sbjct: 201 CRQAGLVK-KSKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMG 249
Score = 90.5 bits (223), Expect = 5e-18
Identities = 41/48 (85%), Positives = 47/48 (97%)
Frame = +1
Query: 679 DFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
DF+++G+M NVCLFLNLANDPTIERIITPR+ALTTAE+LAYQCEKHVL
Sbjct: 241 DFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVL 288
>sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit B (V-ATPase B subunit)
(Vacuolar proton pump B subunit)
Length = 491
Score = 338 bits (866), Expect = 1e-92
Identities = 171/220 (77%), Positives = 194/220 (88%)
Frame = +3
Query: 27 HQLAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQVLEVS 206
H+ A+ RNY + PRL Y+TV GVNGPLVIL++VKFP+++EIVK+TL DG++RSGQVLE+S
Sbjct: 13 HKSAIIRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEIS 72
Query: 207 GSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEIMAEDF 386
+KAVVQVFEGTSGIDAK+T CEFTGDILRTPVSEDMLGRIFNGSGKP D GP ++AEDF
Sbjct: 73 KNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDF 132
Query: 387 LDIQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQICRQA 566
LDI GQ INP SRIYPEEMIQTGIS+IDVMNSIARGQKIPIFSASGLPHNEIAAQI RQ
Sbjct: 133 LDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQIVRQG 192
Query: 567 GLVRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQ 686
GLV+LP++ Q NFAIVFAAMGVNMETARFF + F+
Sbjct: 193 GLVQLPDR---PHEQTNFAIVFAAMGVNMETARFFKQDFE 229
Score = 94.0 bits (232), Expect = 5e-19
Identities = 43/49 (87%), Positives = 49/49 (100%)
Frame = +1
Query: 676 EDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
+DF+E+GSMENVCLFLNLANDPTIERIITPRIALT+AE+LAYQC+KHVL
Sbjct: 226 QDFEENGSMENVCLFLNLANDPTIERIITPRIALTSAEFLAYQCKKHVL 274
>sp|P16140|VATB_YEAST Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
Length = 517
Score = 321 bits (823), Expect = 1e-87
Identities = 160/225 (71%), Positives = 186/225 (82%)
Frame = +3
Query: 12 EALKVHQLAVTRNYISQPRLTYKTVSGVNGPLVILDNVKFPKYAEIVKLTLADGTQRSGQ 191
E +++ AV + + +PRL Y TVSGVNGPLVIL+ VKFP+Y EIV LTL DGT R GQ
Sbjct: 7 ELFAINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDGTVRQGQ 66
Query: 192 VLEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRIFNGSGKPKDGGPEI 371
VLE+ G +A+VQVFEGTSGID K TT EFTG+ LR PVSEDMLGRIF+GSG+P D GP++
Sbjct: 67 VLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPIDNGPKV 126
Query: 372 MAEDFLDIQGQAINPSSRIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQ 551
AED+LDI G INP +RIYPEEMI TG+S+ID MNSIARGQKIPIFSASGLPHNEIAAQ
Sbjct: 127 FAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIAAQ 186
Query: 552 ICRQAGLVRLPEKSVLDDHQDNFAIVFAAMGVNMETARFFMRRFQ 686
ICRQAGLVR P K V D H++NF+IVFAAMGVN+ETARFF + F+
Sbjct: 187 ICRQAGLVR-PTKDVHDGHEENFSIVFAAMGVNLETARFFKQDFE 230
Score = 84.0 bits (206), Expect = 5e-16
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +1
Query: 676 EDFKEHGSMENVCLFLNLANDPTIERIITPRIALTTAEYLAYQCEKHVL 822
+DF+E+GS+E LFLNLANDPTIERIITPR+ALTTAEYLAYQ E+HVL
Sbjct: 227 QDFEENGSLERTSLFLNLANDPTIERIITPRLALTTAEYLAYQTERHVL 275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,850,222
Number of Sequences: 369166
Number of extensions: 1765779
Number of successful extensions: 5433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5326
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)