Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J17
(663 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 248 1e-65
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 245 7e-65
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 245 9e-65
sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial pre... 241 2e-63
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 239 5e-63
sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor 236 4e-62
sp|P34085|CISY_NEUCR Citrate synthase, mitochondrial precursor 235 7e-62
sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor 235 7e-62
sp|P49298|CISY_CITMA Citrate synthase, mitochondrial precursor 235 7e-62
sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial pre... 234 1e-61
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 248 bits (633), Expect = 1e-65
Identities = 117/167 (70%), Positives = 143/167 (85%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVL+W+ ++ + +G +D+ + ++I TL +G+VVPGYGHAVLRKTD
Sbjct: 295 GLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTD 354
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY CQREFALKHLP P+FK+V+QLY+IVP+VL ++ K NP+PNVDAHSGVLLQYYGM
Sbjct: 355 PRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGM 414
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELV 505
TE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD LI+LV
Sbjct: 415 TEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLV 461
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 245 bits (626), Expect = 7e-65
Identities = 117/172 (68%), Positives = 146/172 (84%), Gaps = 1/172 (0%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVL+W+ ++ + +G +D+ + ++I TL +G+VVPGYGHAVLRKTD
Sbjct: 295 GLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTD 354
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY CQREFALKHLP+ P+FK+V+QLY+IVP+VL ++ K NP+PNVDAHSGVLLQYYGM
Sbjct: 355 PRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGM 414
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELV-RKSG 517
TE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS ST+ L++ V KSG
Sbjct: 415 TEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEGLMKFVDSKSG 466
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 245 bits (625), Expect = 9e-65
Identities = 114/167 (68%), Positives = 142/167 (85%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVL+W+ ++ + +G +D+ + ++I TL +G+VVPGYGHAVLRKTD
Sbjct: 295 GLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTD 354
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY CQREFALKHLP P+FK+V+QLY+IVP++L ++ K NP+PNVDAHSGVLLQYYGM
Sbjct: 355 PRYSCQREFALKHLPKDPMFKLVAQLYKIVPNILLEQGKAKNPWPNVDAHSGVLLQYYGM 414
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELV 505
TE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD L++ V
Sbjct: 415 TEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFV 461
>sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial precursor
Length = 433
Score = 241 bits (614), Expect = 2e-63
Identities = 111/168 (66%), Positives = 138/168 (82%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVLLW++ ++E G + + + +++ KTL +G+VVPGYGH VLRKTD
Sbjct: 263 GLAGPLHGLANQEVLLWIKLVVEECGESISKEQLKDYVWKTLNSGKVVPGYGHGVLRKTD 322
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY+CQREFALKHLPD PLF++VS+LY++VP +L + K+ NP+PNVDAHSGVLL YYG+
Sbjct: 323 PRYICQREFALKHLPDDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNYYGL 382
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVR 508
TE YYTVLFG+SR+LGI S LIWDRALGLP+ERPKS + D L R
Sbjct: 383 TEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVNMDWLDNFTR 430
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 239 bits (610), Expect = 5e-63
Identities = 115/166 (69%), Positives = 136/166 (81%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVL W+ ++ + D + ++I TL +G+VVPGYGHAVLRKTD
Sbjct: 268 GLAGPLHGLANQEVLGWLAQLQKAXXXAGADASLRDYIWNTLNSGRVVPGYGHAVLRKTD 327
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY CQREFALKHLP P+FK+V+QLY+IVP+VL ++ ANP+PNVDAHSGVLLQYYGM
Sbjct: 328 PRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAANPWPNVDAHSGVLLQYYGM 387
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIEL 502
TE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD LI L
Sbjct: 388 TEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIAL 433
>sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor
Length = 474
Score = 236 bits (602), Expect = 4e-62
Identities = 114/167 (68%), Positives = 136/167 (81%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVL W+ +M +V+G +D+ I +++ TL AG+VVPGYGHAVLRKTD
Sbjct: 304 GLAGPLHGLANQEVLNWLTEMKKVVGNDLSDQSIKDYLWSTLNAGRVVPGYGHAVLRKTD 363
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY QREFAL+ LPD P+FK+VSQ+Y+I P VL + K NP+PNVDAHSGVLLQYYG+
Sbjct: 364 PRYTSQREFALRKLPDDPMFKLVSQVYKIAPGVLTEHGKTKNPYPNVDAHSGVLLQYYGL 423
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELV 505
TE NYYTVLFG+SRALG+L LI DRA G PIERPKSFST+ +LV
Sbjct: 424 TEANYYTVLFGVSRALGVLPQLIIDRAFGAPIERPKSFSTEAYAKLV 470
>sp|P34085|CISY_NEUCR Citrate synthase, mitochondrial precursor
Length = 469
Score = 235 bits (600), Expect = 7e-62
Identities = 112/169 (66%), Positives = 140/169 (82%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVL W+ +M +VIG +D+ I +++ TL AG+VVPGYGHAVLRKTD
Sbjct: 300 GLAGPLHGLANQEVLNWLTEMKKVIGDDLSDEAITKYLWDTLNAGRVVPGYGHAVLRKTD 359
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY QR+FA +HLP+ P+F++VSQ+Y+I P VL + K NP+PNVDAHSGVLLQ+YG+
Sbjct: 360 PRYSAQRKFAQEHLPEDPMFQLVSQVYKIAPKVLTEHGKTKNPYPNVDAHSGVLLQHYGL 419
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVRK 511
TE NYYTVLFG+SRA+G+L LI DRA+G PIERPKS+STDK IE+ +K
Sbjct: 420 TEANYYTVLFGVSRAIGVLPQLIIDRAVGAPIERPKSYSTDKWIEICKK 468
>sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor
Length = 472
Score = 235 bits (600), Expect = 7e-62
Identities = 108/170 (63%), Positives = 137/170 (80%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVLLW++ ++ G T + + ++I KTL +G+VVPGYGH VLR TD
Sbjct: 302 GLAGPLHGLANQEVLLWIKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHGVLRNTD 361
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY+CQREFALKHLPD PLF++VS L+++VP +L + K+ NP+PNVDAHSGVLL +YG+
Sbjct: 362 PRYICQREFALKHLPDDPLFQLVSNLFEVVPPILTELGKVKNPWPNVDAHSGVLLNHYGL 421
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVRKS 514
TE YYTVLFG+SRA+GI S L+WDRALGLP+ERPKS + + L +KS
Sbjct: 422 TEARYYTVLFGVSRAIGICSQLVWDRALGLPLERPKSVTMEWLENHCKKS 471
>sp|P49298|CISY_CITMA Citrate synthase, mitochondrial precursor
Length = 471
Score = 235 bits (600), Expect = 7e-62
Identities = 107/170 (62%), Positives = 139/170 (81%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVLLW++ +++ G T + + +++ KTL +G+VVPG+GH VLRKTD
Sbjct: 301 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTD 360
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY CQREFALKHLPD PLF++VS+LY++VP +L K K+ NP+PNVDAHSGVLL ++G+
Sbjct: 361 PRYTCQREFALKHLPDDPLFQLVSKLYEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGL 420
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKLIELVRKS 514
E YYTVLFG+SR+LGI S LIWDRALGLP+ERPKS + D + + +K+
Sbjct: 421 AEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDWIEKNCKKA 470
>sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial precursor
Length = 474
Score = 234 bits (598), Expect = 1e-61
Identities = 108/163 (66%), Positives = 135/163 (82%)
Frame = +2
Query: 5 GLAGPLHGLANQEVLLWVQKMIEVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTD 184
GLAGPLHGLANQEVLLW++ ++E G + + + E++ KTL +G+V+PGYGH VLR TD
Sbjct: 302 GLAGPLHGLANQEVLLWIKSVVEECGEDISKEQLKEYVWKTLNSGKVIPGYGHGVLRNTD 361
Query: 185 PRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 364
PRY+CQREFALKHLPD PLF++VS+LY++VP VL + K+ NP+PNVDAHSGVLL +YG+
Sbjct: 362 PRYVCQREFALKHLPDDPLFQLVSKLYEVVPPVLTELGKVKNPWPNVDAHSGVLLNHYGL 421
Query: 365 TETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTDKL 493
TE YYTVLFG+SR+LGI S LIWDRALGL +ERPKS + D L
Sbjct: 422 TEARYYTVLFGVSRSLGICSQLIWDRALGLALERPKSVTMDWL 464
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,761,211
Number of Sequences: 369166
Number of extensions: 1488949
Number of successful extensions: 4053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3982
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)