Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J11
(455 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O08730|GLYG_RAT Glycogenin-1 49 5e-06
sp|Q9R062|GLYG_MOUSE Glycogenin-1 46 3e-05
sp|P13280|GLYG_RABIT Glycogenin-1 44 2e-04
sp|P46976|GLYG_HUMAN Glycogenin-1 41 0.001
sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2) 33 0.23
sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase (HPrK/P) (HPr... 32 0.86
sp|Q25113|BRAC_HEMPU Brachyury protein homolog (T protein) ... 29 4.3
sp|P03101|VL1_HPV16 Major capsid protein L1 29 5.6
sp|P53142|VPS73_YEAST Vacuolar protein sorting protein 73 28 9.6
>sp|O08730|GLYG_RAT Glycogenin-1
Length = 333
Score = 48.9 bits (115), Expect = 5e-06
Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Frame = +1
Query: 34 ESLQLWWTTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSFVP-HEGKFSPKS 177
E L LWW TF PLL M V G ++ L P + S +
Sbjct: 244 EFLNLWWDTFTTNVLPLLQHHGLVKDAGSYLMMEHVTGALSDLSFGEAPPASQPSLSSEE 303
Query: 178 HQQAWEHGIIDYRGLDRFENIKMHLDSKL 264
++ WE G DY G D F+NIK LD+ L
Sbjct: 304 RKERWEQGQADYMGADSFDNIKRKLDTYL 332
>sp|Q9R062|GLYG_MOUSE Glycogenin-1
Length = 333
Score = 46.2 bits (108), Expect = 3e-05
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Frame = +1
Query: 34 ESLQLWWTTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSF-VPHEGKFSPKS 177
E L LWW TF PLL M V G ++ L + S +
Sbjct: 244 EFLNLWWDTFTTNVLPLLQHHGLVKDASSYLMMEHVSGALSDLSFGEAPAAPQPSMSSEE 303
Query: 178 HQQAWEHGIIDYRGLDRFENIKMHLDSKL 264
++ WE G DY G D F+NIK LD+ L
Sbjct: 304 RKERWEQGQADYMGADSFDNIKRKLDTYL 332
>sp|P13280|GLYG_RABIT Glycogenin-1
Length = 333
Score = 43.5 bits (101), Expect = 2e-04
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Frame = +1
Query: 40 LQLWWTTFIAYTKPLLHDE--MGGVCGRMASLDVSSFVPH----------EGKFSPKSHQ 183
L +WW F PLL + C DVS V H + S + +
Sbjct: 246 LNVWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVSSEERK 305
Query: 184 QAWEHGIIDYRGLDRFENIKMHLDSKL 264
+ WE G DY G D F+NIK LD+ L
Sbjct: 306 ERWEQGQADYMGADSFDNIKKKLDTYL 332
>sp|P46976|GLYG_HUMAN Glycogenin-1
Length = 350
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 29/106 (27%)
Frame = +1
Query: 34 ESLQLWWTTFIAYTKPLLHD-------------------EMGGVCGRMASLDVSSFVPH- 153
E L LWW F PLL + CG DVS + H
Sbjct: 244 EFLILWWNIFTTNVLPLLQQFGLVKDTCSYVNVLSDLVYTLAFSCGFCRKEDVSGAISHL 303
Query: 154 ---------EGKFSPKSHQQAWEHGIIDYRGLDRFENIKMHLDSKL 264
+ S + ++ WE G DY G D F+NIK LD+ L
Sbjct: 304 SLGEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYL 349
>sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2)
Length = 501
Score = 33.5 bits (75), Expect = 0.23
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 160 KFSPKSHQQAWEHGIIDYRGLDRFENIKMHLD 255
+ SP+ ++ WE G IDY G D F I+ LD
Sbjct: 466 ELSPEEERRKWEEGRIDYMGKDAFARIQEKLD 497
>sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase (HPrK/P) (HPr(Ser) kinase/phosphorylase)
Length = 315
Score = 31.6 bits (70), Expect = 0.86
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +1
Query: 34 ESLQLWWTTFIAYTKPLLHDEMGGVCGRMASLDVSSFVPHEGKFSPKSHQQAWEHGIIDY 213
E +QL T AY+K + HDE + +M L +FV G P+ QA E +
Sbjct: 52 ERVQLLGKTETAYSKNMSHDERLMIFRKMCQLTTPAFVISTGLPVPEELVQAGEENGVPI 111
Query: 214 RGLDR-----FENIKMHLDSKLA 267
G N+ +L+ KLA
Sbjct: 112 LGTKMTSSRILSNMTNYLEGKLA 134
>sp|Q25113|BRAC_HEMPU Brachyury protein homolog (T protein) (HpTa)
Length = 434
Score = 29.3 bits (64), Expect = 4.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 142 FVPHEGKFSPKSHQQAWEHGIIDYRGLDRFENIKMHLDS 258
F+P G F P HQ G+ + G DR+ ++ H S
Sbjct: 249 FLPGSGAFGPTPHQFNPSIGLPSHAGCDRYGGLRSHRTS 287
>sp|P03101|VL1_HPV16 Major capsid protein L1
Length = 531
Score = 28.9 bits (63), Expect = 5.6
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Frame = -1
Query: 179 WLFGLNFPSCGTKEDTSR------LAILPHTPP 99
W FGL P GT EDT R +A HTPP
Sbjct: 428 WNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPP 460
>sp|P53142|VPS73_YEAST Vacuolar protein sorting protein 73
Length = 486
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 25 QNYESLQLWWTTFI-AYTKPLLHDEMGG---VCGRMASLDVSSFV 147
Q Y ++ W TFI AYT P++HD + G + + + +S+F+
Sbjct: 431 QRYGTICNWVGTFIIAYTFPIIHDVLSGYVFIIFAIIACSISAFI 475
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,550,505
Number of Sequences: 369166
Number of extensions: 877393
Number of successful extensions: 1943
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)