Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J10
(314 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25491|MAS5_YEAST Mitochondrial protein import protein M... 59 3e-09
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 56 3e-08
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 54 1e-07
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 52 3e-07
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 52 6e-07
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 52 6e-07
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 51 9e-07
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 50 2e-06
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2) 50 2e-06
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 50 2e-06
>sp|P25491|MAS5_YEAST Mitochondrial protein import protein MAS5 (Protein YDJ1)
Length = 409
Score = 59.3 bits (142), Expect = 3e-09
Identities = 36/91 (39%), Positives = 48/91 (52%)
Frame = +3
Query: 6 GRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSK 185
G LII+F + FPEN+F + L KL ILPP + ++ +ECVL +DP+ N
Sbjct: 325 GNLIIKFTIKFPENHFTSEENLKKLEEILPP-RIVPAIPKKATVDECVLADFDPAKYNRT 383
Query: 186 SQDRYHERHHVYDSDDEGGMPGGAQRVQCAS 278
R YDSD+E G + VQCAS
Sbjct: 384 RASRGGAN---YDSDEE---EQGGEGVQCAS 408
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 55.8 bits (133), Expect = 3e-08
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMA 176
+G+L I F V FP++ L D+ L S+LP S+ +S L +M+ E EE +H D ++
Sbjct: 331 RGKLYIHFSVDFPDS--LTPDQCKALESVLP-SRNASRLTDMEIDECEETTMH--DVNIE 385
Query: 177 NSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 275
+ ++ + YD DDEG GGAQRVQCA
Sbjct: 386 EEMRRKQHQQAQEAYDEDDEG--HGGAQRVQCA 416
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 53.9 bits (128), Expect = 1e-07
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLD-NMKEAEECVLHPYDPSMAN 179
+G+L IQF V FP++ L D+ + S+LP S S D + E EE +H D ++
Sbjct: 310 RGKLYIQFLVDFPDS--LTPDQCKVIESVLPRSASSQLTDMEIDECEETTMH--DVNIEE 365
Query: 180 SKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 275
+ ++ YD DDEG GG QRVQCA
Sbjct: 366 EMRRKQHQHAQEAYDEDDEG--HGGGQRVQCA 395
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 52.4 bits (124), Expect = 3e-07
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMAN 179
+G+L I F V FP++ L D+ L ++LP PS S + E EE LH D ++ +
Sbjct: 331 KGKLYIHFTVEFPDS--LSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLH--DVNIED 386
Query: 180 SKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 275
+ +R D D++ PGGAQRVQCA
Sbjct: 387 EMRRKAQAQREAYDDDDEDDDHPGGAQRVQCA 418
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 51.6 bits (122), Expect = 6e-07
Identities = 34/86 (39%), Positives = 44/86 (51%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANS 182
+GRLII+F V FPEN FL DKL+ L +LP + D M + E L +DP+
Sbjct: 317 KGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN---- 369
Query: 183 KSQDRYHERHHVYDSDDEGGMPGGAQ 260
+ R H Y+ DDE GG Q
Sbjct: 370 -QERRRHYNGEAYE-DDEHHPRGGVQ 393
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 51.6 bits (122), Expect = 6e-07
Identities = 34/86 (39%), Positives = 44/86 (51%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANS 182
+GRLII+F V FPEN FL DKL+ L +LP + D M + E L +DP+
Sbjct: 317 KGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN---- 369
Query: 183 KSQDRYHERHHVYDSDDEGGMPGGAQ 260
+ R H Y+ DDE GG Q
Sbjct: 370 -QERRRHYNGEAYE-DDEHHPRGGVQ 393
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
Length = 417
Score = 50.8 bits (120), Expect = 9e-07
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMA 176
+G++ I F V FP++ L D++ L +ILPP S SL M+ E EE LH + ++
Sbjct: 331 KGKMYIHFTVEFPDS--LNPDQVKSLEAILPPKP-SMSLTYMELDECEETTLH--NVNIE 385
Query: 177 NSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 275
+ + + YD DDE P G QRVQCA
Sbjct: 386 EEMKRKQTQAQQEAYDEDDE---PAGGQRVQCA 415
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 50.1 bits (118), Expect = 2e-06
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMA 176
+G+L I F V FP++ L ++ L +LPP + S L +M+ E EE LH
Sbjct: 329 KGKLYIHFSVEFPDS--LNPEQCKALEGVLPP-RTSVQLSDMELDECEETTLHD-----V 380
Query: 177 NSKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 275
N + + R + YD D++ M GGAQRVQCA
Sbjct: 381 NIEEEMRRKQAQEAYDEDED--MHGGAQRVQCA 411
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
Length = 419
Score = 50.1 bits (118), Expect = 2e-06
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMAN 179
+G+L I F V FPE+ L D+ + ++LP P++ + S + + EE LH +
Sbjct: 332 KGKLYIHFTVEFPES--LSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVN---IE 386
Query: 180 SKSQDRYHERHHVYDSDDEGGMPGGAQRVQCA 275
+ + + + YD DDE PGGAQRVQCA
Sbjct: 387 DEMKRKAQAQREAYD-DDEEDHPGGAQRVQCA 417
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 49.7 bits (117), Expect = 2e-06
Identities = 31/90 (34%), Positives = 48/90 (53%)
Frame = +3
Query: 3 QGRLIIQFDVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANS 182
+G LIIQF V+FPE ++L +KL +L ++LPP Q D+M + E L + P+ N
Sbjct: 318 KGILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRITDDMDQVE---LKEFCPNEQN- 373
Query: 183 KSQDRYHERHHVYDSDDEGGMPGGAQRVQC 272
+ + Y+ D++G G VQC
Sbjct: 374 -----WRQHREAYEEDEDGPQAG----VQC 394
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,526,903
Number of Sequences: 369166
Number of extensions: 610477
Number of successful extensions: 1957
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1951
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)