Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J09
(415 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 precursor... 78 8e-15
sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain containing... 77 1e-14
sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain containing... 77 1e-14
sp|Q5RE32|TMEDA_PONPY Transmembrane emp24 domain containing... 77 1e-14
sp|Q63584|TMEDA_RAT Transmembrane emp24 domain containing p... 77 1e-14
sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain containing... 77 1e-14
sp|Q90515|TMEDA_FUGRU Transmembrane emp24 domain containing... 77 1e-14
sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain containing... 77 1e-14
sp|P54837|ERV25_YEAST Protein ERV25 precursor 51 8e-07
sp|Q9BVK6|TMED9_HUMAN Transmembrane emp24 domain containing... 44 2e-04
>sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 precursor (21 kDa transmembrane
trafficking protein) (Integral membrane protein p23)
Length = 219
Score = 77.8 bits (190), Expect = 8e-15
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 137
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 175 MRDTNESTNTRVLYFSIFSMLCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 77.4 bits (189), Expect = 1e-14
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 137
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 175 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein) (p24delta) (S31III125) (S31I125)
(Tmp-21-I)
Length = 219
Score = 77.4 bits (189), Expect = 1e-14
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 137
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 175 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q5RE32|TMEDA_PONPY Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 77.4 bits (189), Expect = 1e-14
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 137
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 175 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q63584|TMEDA_RAT Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 77.4 bits (189), Expect = 1e-14
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 137
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 175 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein) (Integral membrane protein p23)
Length = 219
Score = 77.4 bits (189), Expect = 1e-14
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 137
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 175 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q90515|TMEDA_FUGRU Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (S31III125)
Length = 213
Score = 77.4 bits (189), Expect = 1e-14
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 137
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 169 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 213
>sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 77.4 bits (189), Expect = 1e-14
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLIE 137
MRDTNEST+ RV YFS+FSM CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 175 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|P54837|ERV25_YEAST Protein ERV25 precursor
Length = 211
Score = 51.2 bits (121), Expect = 8e-07
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +3
Query: 3 MRDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLI 134
+RDTNEST+ RV FS+ + L L +WQV YL+ YFK+K +I
Sbjct: 168 LRDTNESTNRRVRNFSILVIIVLSSLGVWQVNYLKNYFKTKHII 211
>sp|Q9BVK6|TMED9_HUMAN Transmembrane emp24 domain containing protein 9 precursor
(Glycoprotein 25L2)
Length = 214
Score = 43.5 bits (101), Expect = 2e-04
Identities = 16/43 (37%), Positives = 31/43 (72%)
Frame = +3
Query: 6 RDTNESTHNRVFYFSLFSMACLMGLAIWQVLYLRRYFKSKKLI 134
R T+EST+ RV ++S+ L+ + +WQ+ +L+ +F++KKL+
Sbjct: 172 RQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,401,501
Number of Sequences: 369166
Number of extensions: 675853
Number of successful extensions: 2167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2158
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)