Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J07
(576 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 283 2e-76
sp|P41116|RL8_XENLA 60S ribosomal protein L8 282 4e-76
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 282 4e-76
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 282 5e-76
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 281 6e-76
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 278 9e-75
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 276 3e-74
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 275 8e-74
sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 273 3e-73
sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 >gi|51701882|s... 272 4e-73
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 283 bits (725), Expect = 2e-76
Identities = 128/174 (73%), Positives = 154/174 (88%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++SH
Sbjct: 80 EGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRV
Sbjct: 140 NPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 538
RGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 282 bits (722), Expect = 4e-76
Identities = 127/174 (72%), Positives = 154/174 (88%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK GDRG++ARASGN A ++SH
Sbjct: 80 EGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRV
Sbjct: 140 NPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 538
RGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 282 bits (722), Expect = 4e-76
Identities = 127/174 (72%), Positives = 154/174 (88%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK GDRG++ARASGN A ++SH
Sbjct: 80 EGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRV
Sbjct: 140 NPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 538
RGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 282 bits (721), Expect = 5e-76
Identities = 127/174 (72%), Positives = 153/174 (87%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++SH
Sbjct: 80 EGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRV
Sbjct: 140 NPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 538
RGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+A RRTG LRGTK ++
Sbjct: 200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVRRTGRLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 281 bits (720), Expect = 6e-76
Identities = 126/174 (72%), Positives = 154/174 (88%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EG+ TGQF+YCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++SH
Sbjct: 80 EGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRV
Sbjct: 140 NPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 538
RGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 278 bits (710), Expect = 9e-75
Identities = 126/174 (72%), Positives = 152/174 (87%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EG+ TGQFV+CGKKA++N+GNVLP+ +PEGT+IC LEEK GDRG++ARASGN A ++SH
Sbjct: 80 EGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVISH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYK KRNCWPRV
Sbjct: 140 NPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 538
RGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 276 bits (705), Expect = 3e-74
Identities = 124/171 (72%), Positives = 150/171 (87%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EGM TGQFVYCG++A++ +GNV+PI +PEGT++CNLEEK+GDRG++AR SGN A +++H
Sbjct: 80 EGMYTGQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAYHKYK KRNCWP+V
Sbjct: 140 NPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 529
RGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 275 bits (702), Expect = 8e-74
Identities = 125/171 (73%), Positives = 149/171 (87%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EGM TGQFVYCGK+A++ +GNVLPI +PEGT++CNLEEK+GDRG++AR SGN A +++H
Sbjct: 80 EGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAY KYK KRNCWP+V
Sbjct: 140 NPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 529
RGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8
Length = 256
Score = 273 bits (697), Expect = 3e-73
Identities = 124/171 (72%), Positives = 147/171 (85%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EGM TGQFVYCG+KA + +GNV+P+ +PEGT+ICNLEEK+GDRGR+AR SGN A +++H
Sbjct: 80 EGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N +T KTRVKLPSG KK++ S+ RAM+GIVAGGGRI+KP+LKAGRAYHKYK KRN WP+V
Sbjct: 140 NQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 529
RGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AARRTG +RG K
Sbjct: 200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK 250
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8
sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8
Length = 257
Score = 272 bits (696), Expect = 4e-73
Identities = 125/171 (73%), Positives = 145/171 (84%)
Frame = +2
Query: 17 EGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSH 196
EG+ TGQFVYCGKKA + VGNV+P+ ++PEGT++CNLEEK GDRGR+ARASGN A ++ H
Sbjct: 80 EGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGH 139
Query: 197 NSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRV 376
N + +TRVKLPSG KK+L SS R M+GIVAGGGRI+KP+LKAGRAYHKYK KRNCWP V
Sbjct: 140 NPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYV 199
Query: 377 RGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 529
RGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AARRTG +RG K
Sbjct: 200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,011,597
Number of Sequences: 369166
Number of extensions: 1389976
Number of successful extensions: 4289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3948
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)