Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J05
(686 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26065|ACT_PLAMG Actin, adductor muscle 417 e-116
sp|P53464|ACTM_HELTB Actin, cytoskeletal (M) 414 e-115
sp|P53463|ACTM_HELER Actin, cytoskeletal (M) 414 e-115
sp|P10984|ACT2_CAEEL Actin-2 413 e-115
sp|P92176|ACT2_LUMTE Actin-2 413 e-115
sp|P30163|ACT2_ONCVO Actin-2 413 e-115
sp|P30162|ACT1_ONCVO Actin-1 413 e-115
sp|P10986|ACT4_CAEEL Actin-4 412 e-115
sp|P10983|ACT1_CAEEL Actin-1/3 412 e-115
sp|O16808|ACT_MAYDE Actin 412 e-115
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 417 bits (1071), Expect = e-116
Identities = 210/229 (91%), Positives = 216/229 (94%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + +NE A+A+SS
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMATAASS 234
>sp|P53464|ACTM_HELTB Actin, cytoskeletal (M)
Length = 376
Score = 414 bits (1064), Expect = e-115
Identities = 208/229 (90%), Positives = 215/229 (93%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E A+A++S
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYTALDFEQEMATAAAS 234
>sp|P53463|ACTM_HELER Actin, cytoskeletal (M)
Length = 376
Score = 414 bits (1064), Expect = e-115
Identities = 208/229 (90%), Positives = 215/229 (93%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E A+A++S
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYSALDFEQEMATAAAS 234
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 413 bits (1061), Expect = e-115
Identities = 208/229 (90%), Positives = 214/229 (93%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E A+A+SS
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 234
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 413 bits (1061), Expect = e-115
Identities = 211/231 (91%), Positives = 216/231 (93%), Gaps = 3/231 (1%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNE--TASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E TASASSS
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMNTASASSS 236
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 413 bits (1061), Expect = e-115
Identities = 208/229 (90%), Positives = 214/229 (93%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E A+A+SS
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 234
>sp|P30162|ACT1_ONCVO Actin-1
Length = 376
Score = 413 bits (1061), Expect = e-115
Identities = 208/229 (90%), Positives = 214/229 (93%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E A+A+SS
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 234
>sp|P10986|ACT4_CAEEL Actin-4
Length = 376
Score = 412 bits (1060), Expect = e-115
Identities = 207/229 (90%), Positives = 214/229 (93%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFN PAMYVAIQAVLSLYASGRTTG+VLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E A+A+SS
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 234
>sp|P10983|ACT1_CAEEL Actin-1/3
Length = 376
Score = 412 bits (1060), Expect = e-115
Identities = 207/229 (90%), Positives = 214/229 (93%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFN PAMYVAIQAVLSLYASGRTTG+VLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E A+A+SS
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 234
>sp|O16808|ACT_MAYDE Actin
Length = 376
Score = 412 bits (1060), Expect = e-115
Identities = 207/229 (90%), Positives = 215/229 (93%), Gaps = 1/229 (0%)
Frame = +2
Query: 2 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 181
VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 182 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 361
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 362 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 541
ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 542 LTDYLMKILTERGYSFTTTAEENRER-YQENLLHRSDLMQNETASASSS 685
LTDYLMKILTERGYSFTTTAE R +E L + + + E A+A++S
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLSYVALDFEQEMATAAAS 234
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,906,260
Number of Sequences: 369166
Number of extensions: 1707301
Number of successful extensions: 5992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5900
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)