Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J01
(561 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JK81|MYG1_MOUSE MYG1 protein (Gamm1 protein) 177 2e-44
sp|Q9HB07|MYG1_HUMAN MYG1 protein 176 5e-44
sp|O17606|YK4P_CAEEL Hypothetical UPF0160 protein C27H6.8 i... 173 3e-43
sp|P40093|YEY6_YEAST Hypothetical UPF0160 protein YER156c 114 1e-25
sp|Q9P7T6|YIW4_SCHPO Hypothetical UPF0160 protein C694.04c ... 107 3e-23
sp|Q8X598|ARGM_ECO57 Succinylornithine transaminase (Succin... 33 0.63
sp|P77581|ARGM_ECOLI Succinylornithine transaminase (Succin... 32 1.4
sp|Q8FGZ9|ARGM_ECOL6 Succinylornithine transaminase (Succin... 32 1.4
sp|P16127|CHLI_ARATH Magnesium-chelatase subunit chlI, chlo... 30 3.1
sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn0489/CP0265/CPj0489... 30 5.3
>sp|Q9JK81|MYG1_MOUSE MYG1 protein (Gamm1 protein)
Length = 380
Score = 177 bits (448), Expect = 2e-44
Identities = 81/186 (43%), Positives = 127/186 (68%), Gaps = 2/186 (1%)
Frame = +3
Query: 6 GGVFDPEKNKFDHHQKSFNETFKTLKPEKPWEIKLSSAGLIYVYFGREILTEICKPYKTT 185
GG ++P+ +++DHHQ++F ET +L P KPW+ KLSSAGL+Y++FGR++L ++ +
Sbjct: 94 GGEYNPQSHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGRKLLAQLLGTSEED 153
Query: 186 IDMDILYDKMYEHFVMEIDAIDNGVPV-CDCEPRYSISSNLSGRVSHINPWGNQKTDENE 362
+D +YDKMYE+FV E+DA+DNG+ + EPRY++++ LS RV+ +NP NQ + E
Sbjct: 154 SVVDTIYDKMYENFVEEVDAVDNGISQWAEGEPRYAMTTTLSARVARLNPTWNQPNQDTE 213
Query: 363 L-CEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGGFSWKS 539
+AM LV EF+ ++NFY + W AR +V++A+ R+ V SG I++ +GG WK
Sbjct: 214 AGFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKE 273
Query: 540 HFFDLE 557
H + LE
Sbjct: 274 HLYHLE 279
>sp|Q9HB07|MYG1_HUMAN MYG1 protein
Length = 376
Score = 176 bits (445), Expect = 5e-44
Identities = 81/186 (43%), Positives = 125/186 (67%), Gaps = 2/186 (1%)
Frame = +3
Query: 6 GGVFDPEKNKFDHHQKSFNETFKTLKPEKPWEIKLSSAGLIYVYFGREILTEICKPYKTT 185
GG +DP ++++DHHQ+SF ET +L P KPW+ KLSSAGLIY++FG ++L ++ P +
Sbjct: 95 GGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGPSEED 154
Query: 186 IDMDILYDKMYEHFVMEIDAIDNGVPV-CDCEPRYSISSNLSGRVSHINP-WGNQKTDEN 359
+ LYDKMYE+FV E+DA+DNG+ + EPRY++++ LS RV+ +NP W + D
Sbjct: 155 SMVGTLYDKMYENFVEEVDAVDNGISQWAEGEPRYALTTTLSARVARLNPTWNHPDQDTE 214
Query: 360 ELCEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGGFSWKS 539
++AM LV EF+ +++FY + W AR +V++A+ R+ V SG I++ +G WK
Sbjct: 215 AGFKRAMDLVQEEFLQRLDFYQHSWLPARALVEEALAQRFQVDPSGEIVELAKGACPWKE 274
Query: 540 HFFDLE 557
H + LE
Sbjct: 275 HLYHLE 280
>sp|O17606|YK4P_CAEEL Hypothetical UPF0160 protein C27H6.8 in chromosome V
Length = 340
Score = 173 bits (438), Expect = 3e-43
Identities = 79/185 (42%), Positives = 117/185 (63%), Gaps = 1/185 (0%)
Frame = +3
Query: 6 GGVFDPEKNKFDHHQKSFNETFKTLKPEKPWEIKLSSAGLIYVYFGREILTEICKPYKTT 185
GG+FD K ++DHHQ+ F +T +TL+ + ++ KLSSAGL+Y ++GRE++ +I ++
Sbjct: 53 GGIFDHSKQRYDHHQRGFTDTMRTLE-KLNFDTKLSSAGLVYAHYGREVINQILGGNVSS 111
Query: 186 IDMDILYDKMYEHFVMEIDAIDNGVPVCDCEPRYSISSNLSGRVSHINP-WGNQKTDENE 362
+D+ Y ++YE FV IDAIDNG+ D PRY S NLS R N W + D +E
Sbjct: 112 SMIDLFYHRLYEQFVESIDAIDNGISQYDGVPRYHSSGNLSSRTGQFNSHWNEPENDADE 171
Query: 363 LCEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGGFSWKSH 542
++AM+ +G EF V + N WW ARE+++ A+D R+ + SG I+ E GG WK H
Sbjct: 172 RFQQAMQFIGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGRIILIENGGCPWKEH 231
Query: 543 FFDLE 557
FFD+E
Sbjct: 232 FFDIE 236
>sp|P40093|YEY6_YEAST Hypothetical UPF0160 protein YER156c
Length = 338
Score = 114 bits (286), Expect = 1e-25
Identities = 69/185 (37%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Frame = +3
Query: 36 FDHHQKSFNETFKTLKPEKPWEIKLSSAGLIYVYFGREILTEICKPYKTTIDMDILYDKM 215
FDHHQ+ F ETF + ++ KLSSAGLI+ ++GR+I+ I ++ D+D+LYDK+
Sbjct: 74 FDHHQRGFFETFN-----EKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKV 128
Query: 216 YEHFVMEIDAIDNGVPV------CDCEPRYSISS-NLSGRVSHINP-WGNQKTDEN-ELC 368
Y+ FV +DA DNG+ + EP + ++ ++ G +S +NP W +DE+ + C
Sbjct: 129 YKQFVEALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWNEDTSDESFDRC 188
Query: 369 -EKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGGFSWKSHF 545
+A + +G FV V Y W A+ +V +AID R +V KSG I+ Q WK H
Sbjct: 189 FARASEFIGGVFVTLVRGYGQSWLPAKALVAQAIDERMDVDKSGKIIVLPQ-FCPWKEHL 247
Query: 546 FDLEK 560
++LE+
Sbjct: 248 YELER 252
>sp|Q9P7T6|YIW4_SCHPO Hypothetical UPF0160 protein C694.04c in chromosome I
Length = 324
Score = 107 bits (266), Expect = 3e-23
Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Frame = +3
Query: 6 GGVFDPEKNKFDHHQKSFNETFKTLKPEKPWEIKLSSAGLIYVYFGREILTEICKPYKTT 185
GG +D K FDHHQ+ FN+TF + +LSSAGLIY +FGRE++ + K
Sbjct: 55 GGKYDGIKY-FDHHQREFNDTFSP-----KYSTRLSSAGLIYKHFGREVIHAVLPQLKIN 108
Query: 186 I-DMDILYDKMYEHFVMEIDAIDNGVPV--CDCEPRYSISSNLSGRVSHINP-WGNQKTD 353
D++ LY+K+Y+ FV +DA DNG+ +P + + +L VS P W ++K D
Sbjct: 109 EQDLETLYEKVYQSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNSEKQD 168
Query: 354 EN---ELCEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGG 524
+ E +KA L+G+ FV V Y W A+ + ++AI K IL +Q
Sbjct: 169 DQTYLECFQKASDLMGTWFVRSVEHYALSWLPAKTLAREAILKA----KDSPILIVDQ-F 223
Query: 525 FSWKSHFFDLEK 560
F WK H FD+EK
Sbjct: 224 FPWKGHLFDIEK 235
>sp|Q8X598|ARGM_ECO57 Succinylornithine transaminase (Succinylornithine aminotransferase)
Length = 406
Score = 32.7 bits (73), Expect = 0.63
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 336 GNQKTDENELCEKAMKLVGSEFVDKVNFYVNCWWSARE----MVQKAIDNRYNVHKSGLI 503
GN T+E+ L A KL+ + F D+V F+ N A E + +K +RY HKSG++
Sbjct: 75 GNGYTNESVL-RLAKKLIDATFADRV-FFCNSGAEANEAALKLARKFAHDRYGSHKSGIV 132
>sp|P77581|ARGM_ECOLI Succinylornithine transaminase (Succinylornithine aminotransferase)
(Carbon starvation protein C)
Length = 406
Score = 31.6 bits (70), Expect = 1.4
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 336 GNQKTDENELCEKAMKLVGSEFVDKVNFYVNCWWSARE----MVQKAIDNRYNVHKSGLI 503
GN T+E L A KL+ + F D+V F+ N A E + +K +RY HKSG++
Sbjct: 75 GNGYTNEPVL-RLAKKLIDATFADRV-FFCNSGAEANEAALKLARKFAHDRYGSHKSGIV 132
>sp|Q8FGZ9|ARGM_ECOL6 Succinylornithine transaminase (Succinylornithine aminotransferase)
Length = 406
Score = 31.6 bits (70), Expect = 1.4
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 336 GNQKTDENELCEKAMKLVGSEFVDKVNFYVNCWWSARE----MVQKAIDNRYNVHKSGLI 503
GN T+E L A KL+ + F D+V F+ N A E + +K +RY HKSG++
Sbjct: 75 GNGYTNEPVL-RLAKKLIDATFADRV-FFCNSGAEANEAALKLARKFAHDRYGSHKSGIV 132
>sp|P16127|CHLI_ARATH Magnesium-chelatase subunit chlI, chloroplast precursor
(Mg-protoporphyrin IX chelatase) (Protein CS/CH-42)
Length = 424
Score = 30.4 bits (67), Expect = 3.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 24 EKNKFDHHQKSFNETFKTLKPEKPWEIKLSSAGLIYVYFGREILTEICK 170
E+ +FD + K F +T+KT + + +I + A L V RE+ +I +
Sbjct: 304 ERARFDSNPKDFRDTYKTEQDKLQDQISTARANLSSVQIDRELKVKISR 352
>sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn0489/CP0265/CPj0489/CpB0509
Length = 290
Score = 29.6 bits (65), Expect = 5.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 6 GGVFDPEKNKFDHHQKSFNETFKTLKPEKPWEIKLSSAGLIYVY 137
GGV+ E +FDHHQ S++ ++ SSAG+I Y
Sbjct: 55 GGVYSIENKRFDHHQVSYDGSW-------------SSAGMILHY 85
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,739,596
Number of Sequences: 369166
Number of extensions: 1160357
Number of successful extensions: 3085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3073
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)