Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_I09
(298 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JMA1|UBP14_MOUSE Ubiquitin carboxyl-terminal hydrolase... 112 3e-25
sp|P54578|UBP14_HUMAN Ubiquitin carboxyl-terminal hydrolase... 110 8e-25
sp|P40826|UBP14_RABIT Ubiquitin carboxyl-terminal hydrolase... 110 8e-25
sp|P60051|UBP14_PANTR Ubiquitin carboxyl-terminal hydrolase... 110 8e-25
sp|Q17361|UBP14_CAEEL Ubiquitin carboxyl-terminal hydrolase... 82 4e-16
sp|Q92353|UBP6_SCHPO Probable ubiquitin carboxyl-terminal h... 61 9e-10
sp|P43593|UBP6_YEAST Ubiquitin carboxyl-terminal hydrolase ... 55 4e-08
sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase... 51 9e-07
sp|P39967|UBP9_YEAST Ubiquitin carboxyl-terminal hydrolase ... 51 9e-07
sp|P53874|UBP10_YEAST Ubiquitin carboxyl-terminal hydrolase... 49 3e-06
>sp|Q9JMA1|UBP14_MOUSE Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 112 bits (279), Expect = 3e-25
Identities = 49/67 (73%), Positives = 57/67 (85%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDIWLKYDDDSVTQVTAEDILRLSGGGDWHCAYVLL 180
L A++THQGRSSSSGHYV WVR+ D W+K+DDD V+ VT EDILRLSGGGDWH AYVLL
Sbjct: 419 LQAVLTHQGRSSSSGHYVSWVRRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLL 478
Query: 181 YGPKSIE 201
YGP+ +E
Sbjct: 479 YGPRRVE 485
>sp|P54578|UBP14_HUMAN Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 494
Score = 110 bits (276), Expect = 8e-25
Identities = 48/67 (71%), Positives = 57/67 (85%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDIWLKYDDDSVTQVTAEDILRLSGGGDWHCAYVLL 180
L A++THQGRSSSSGHYV WV++ D W+K+DDD V+ VT EDILRLSGGGDWH AYVLL
Sbjct: 420 LQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLL 479
Query: 181 YGPKSIE 201
YGP+ +E
Sbjct: 480 YGPRRVE 486
>sp|P40826|UBP14_RABIT Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 110 bits (276), Expect = 8e-25
Identities = 48/67 (71%), Positives = 57/67 (85%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDIWLKYDDDSVTQVTAEDILRLSGGGDWHCAYVLL 180
L A++THQGRSSSSGHYV WV++ D W+K+DDD V+ VT EDILRLSGGGDWH AYVLL
Sbjct: 419 LQAVLTHQGRSSSSGHYVSWVKRKHDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLL 478
Query: 181 YGPKSIE 201
YGP+ +E
Sbjct: 479 YGPRRVE 485
>sp|P60051|UBP14_PANTR Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 110 bits (276), Expect = 8e-25
Identities = 48/67 (71%), Positives = 57/67 (85%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDIWLKYDDDSVTQVTAEDILRLSGGGDWHCAYVLL 180
L A++THQGRSSSSGHYV WV++ D W+K+DDD V+ VT EDILRLSGGGDWH AYVLL
Sbjct: 420 LQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLL 479
Query: 181 YGPKSIE 201
YGP+ +E
Sbjct: 480 YGPRRVE 486
>sp|Q17361|UBP14_CAEEL Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 489
Score = 82.0 bits (201), Expect = 4e-16
Identities = 39/69 (56%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGD-IWLKYDDDSVTQVTAEDILRLSGGGDWHCAYVL 177
L I+TH+GRSS GHYV W+R S D W +DD+ VT V E IL+ SGGGDWH AYVL
Sbjct: 394 LKGIITHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTSGGGDWHSAYVL 453
Query: 178 LYGPKSIEK 204
LY + I++
Sbjct: 454 LYEARVIKQ 462
>sp|Q92353|UBP6_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 6 (Ubiquitin
thiolesterase 6) (Ubiquitin-specific processing protease
6) (Deubiquitinating enzyme 6)
Length = 467
Score = 60.8 bits (146), Expect = 9e-10
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDI--WLKYDDDSVTQVTAEDILRLSGGGDWHCAYV 174
L +++H G S+SSGHY W+R S + W +++D V+ V AE I L GGG+ AY+
Sbjct: 399 LVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVSIVPAEKIETLDGGGEADSAYI 458
Query: 175 LLYGPKSI 198
LLY K I
Sbjct: 459 LLYKAKDI 466
>sp|P43593|UBP6_YEAST Ubiquitin carboxyl-terminal hydrolase 6 (Ubiquitin thiolesterase 6)
(Ubiquitin-specific processing protease 6)
(Deubiquitinating enzyme 6)
Length = 499
Score = 55.5 bits (132), Expect = 4e-08
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDI--WLKYDDDSVTQVTAEDILRLSGGGDWHCAYV 174
L ++THQG +S SGHY ++R D W K++DD V+ V E I L+GGG+ A +
Sbjct: 432 LIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALI 491
Query: 175 LLY 183
L+Y
Sbjct: 492 LMY 494
>sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 (Ubiquitin thiolesterase
51) (Ubiquitin-specific processing protease 51)
(Deubiquitinating enzyme 51)
Length = 711
Score = 50.8 bits (120), Expect = 9e-07
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDIWLKYDDDSVTQVTAEDILRLSGGGDWHCAYVLL 180
L A++ H G + SGHY ++RQ D W DD +T+ T ED+L G Y+L
Sbjct: 651 LFAVINHHG-TLESGHYTSFIRQQKDQWFSCDDAIITKATIEDLLYSEG-------YLLF 702
Query: 181 YGPKSIEKD 207
Y + +EKD
Sbjct: 703 YHKQGLEKD 711
>sp|P39967|UBP9_YEAST Ubiquitin carboxyl-terminal hydrolase 9 (Ubiquitin thiolesterase 9)
(Ubiquitin-specific processing protease 9)
(Deubiquitinating enzyme 9)
Length = 754
Score = 50.8 bits (120), Expect = 9e-07
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDIWLKYDDDSVTQVTAEDILRLSG-GGDWHCAYVL 177
L +V H G GHYV R WL YDD++V + E +L+ +G GD AYVL
Sbjct: 603 LSGVVIHMGSGPQHGHYVCICRNEKFGWLLYDDETVESIKEETVLQFTGHPGDQTTAYVL 662
Query: 178 LYGPKSIEKDAYKNNGDQAVSQ 243
Y +K +N SQ
Sbjct: 663 FYKETQADKTENQNENIDTSSQ 684
>sp|P53874|UBP10_YEAST Ubiquitin carboxyl-terminal hydrolase 10 (Ubiquitin thiolesterase
10) (Ubiquitin-specific processing protease 10)
(Deubiquitinating enzyme 10) (Disrupter of telomere
silencing protein 4)
Length = 792
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 1 LHAIVTHQGRSSSSGHYVGWVRQSGDIWLKYDDDSVTQVTAEDILRLSGGGDWHCAYVLL 180
L ++V H+GRS SSGHY+ +Q W YDD+ + ++ D+L+ AY LL
Sbjct: 676 LLSVVVHEGRSLSSGHYIAHCKQPDGSWATYDDEYINIISERDVLKEPN------AYYLL 729
Query: 181 Y---GPKSI 198
Y PKS+
Sbjct: 730 YTRLTPKSV 738
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,789,145
Number of Sequences: 369166
Number of extensions: 711831
Number of successful extensions: 1982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1968
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)