Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H21
(281 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26563|CATC_SCHMA Cathepsin C precursor 89 4e-18
sp|P97821|CATC_MOUSE Dipeptidyl-peptidase I precursor (DPP-... 71 9e-13
sp|P80067|CATC_RAT Dipeptidyl-peptidase I precursor (DPP-I)... 68 7e-12
sp|P53634|CATC_HUMAN Dipeptidyl-peptidase I precursor (DPP-... 65 6e-11
sp|Q60HG6|CATC_MACFA Dipeptidyl-peptidase I precursor (DPP-... 63 2e-10
sp|O97578|CATC_CANFA Dipeptidyl-peptidase I precursor (DPP-... 61 9e-10
sp|O04663|IF4E2_ARATH Eukaryotic translation initiation fac... 30 1.7
sp|P40547|VID28_YEAST Vacuolar import and degradation prote... 30 1.7
sp|Q84424|MCE_PBCV1 mRNA capping enzyme (mRNA guanylyltrans... 28 5.0
>sp|Q26563|CATC_SCHMA Cathepsin C precursor
Length = 454
Score = 88.6 bits (218), Expect = 4e-18
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Frame = +1
Query: 1 ILLAFCLVQLSVSDTPADCTYQDVIGEWGVFTGNFNVSRSTSKLVATKT--LTLIYPNWA 174
IL+ ++ + +DTPA+CTY+D G W G++ S+ KL + ++ ++L+YP+ A
Sbjct: 8 ILIILACLRFTCADTPANCTYEDAHGRWKFHIGDYQ-SKCPEKLNSKQSVVISLLYPDIA 66
Query: 175 VDEFGNYGKWTLIYNQGFEETITNKKYFGFFDYK 276
+DEFGN G WTLIYNQGFE TI ++K+ F YK
Sbjct: 67 IDEFGNRGHWTLIYNQGFEVTINHRKWLVIFAYK 100
>sp|P97821|CATC_MOUSE Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 462
Score = 70.9 bits (172), Expect = 9e-13
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Frame = +1
Query: 1 ILLAFCLVQLSVSDTPADCTYQDVIGEWGVFTGNFNVSRST---SKLVATKTLTLIYP-- 165
+LL C V+ SDTPA+CTY D++G W VF SRS S + AT+ +++
Sbjct: 15 VLLGVCTVR---SDTPANCTYPDLLGTW-VFQVGPRSSRSDINCSVMEATEEKVVVHLKK 70
Query: 166 -NWAVDEFGNYGKWTLIYNQGFEETITNKKYFGFFDYK 276
+ A DE GN G +TLIYNQGFE + + K+F FF Y+
Sbjct: 71 LDTAYDELGNSGHFTLIYNQGFEIVLNDYKWFAFFKYE 108
>sp|P80067|CATC_RAT Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 462
Score = 67.8 bits (164), Expect = 7e-12
Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Frame = +1
Query: 1 ILLAFCLVQLSVSDTPADCTYQDVIGEWGVFTG--------NFNVSRSTSKLVATKTLTL 156
+LL C V SDTPA+CTY D++G W G N +V T + V L
Sbjct: 15 VLLGVCTVS---SDTPANCTYPDLLGTWVFQVGPRHPRSHINCSVMEPTEEKVVIHLKKL 71
Query: 157 IYPNWAVDEFGNYGKWTLIYNQGFEETITNKKYFGFFDYK 276
+ A DE GN G +TLIYNQGFE + + K+F FF Y+
Sbjct: 72 ---DTAYDEVGNSGYFTLIYNQGFEIVLNDYKWFAFFKYE 108
>sp|P53634|CATC_HUMAN Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 463
Score = 64.7 bits (156), Expect = 6e-11
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Frame = +1
Query: 1 ILLAFCLVQLSVS-----DTPADCTYQDVIGEWGVFTGNFNVSRST--SKLVATKTLTLI 159
+LLA L+ LS DTPA+CTY D++G W G+ R S + + ++
Sbjct: 7 LLLAALLLLLSGDGAVRCDTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVV 66
Query: 160 YP---NWAVDEFGNYGKWTLIYNQGFEETITNKKYFGFFDYKK 279
Y + A D+ GN G +T+IYNQGFE + + K+F FF YK+
Sbjct: 67 YLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYKE 109
>sp|Q60HG6|CATC_MACFA Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 463
Score = 62.8 bits (151), Expect = 2e-10
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Frame = +1
Query: 4 LLAFCLVQLSVS-----DTPADCTYQDVIGEWGVFTG--------NFNVSRSTSKLVATK 144
LLA L+ LS DTPA+CTY D++G W G N +V K V
Sbjct: 8 LLAALLLLLSGDRAVRCDTPANCTYLDLLGTWVFQVGSSGSLRDVNCSVMGPPEKKVVVH 67
Query: 145 TLTLIYPNWAVDEFGNYGKWTLIYNQGFEETITNKKYFGFFDYKK 279
L + A D+ GN G +T+IYNQGFE + + K+F FF YK+
Sbjct: 68 LQKL---DTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYKE 109
>sp|O97578|CATC_CANFA Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain 1;
Dipeptidyl-peptidase I heavy chain 2;
Dipeptidyl-peptidase I heavy chain 3;
Dipeptidyl-peptidase I heavy chain 4;
Dipeptidyl-peptidase I light chain]
Length = 435
Score = 60.8 bits (146), Expect = 9e-10
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +1
Query: 40 DTPADCTYQDVIGEWGVFTG-------NFNVSRSTSKLVATKTLTLIYPNWAVDEFGNYG 198
DTPA+CT+ +++G W G N +V K V L + A D FGN G
Sbjct: 1 DTPANCTHPELLGTWVFQVGPAGSRSVNCSVMGPPEKKVVVHLEKL---DTAYDNFGNTG 57
Query: 199 KWTLIYNQGFEETITNKKYFGFFDYKK 279
+T+IYNQGFE + + K+F FF YK+
Sbjct: 58 HFTIIYNQGFEIVLNDYKWFAFFKYKE 84
>sp|O04663|IF4E2_ARATH Eukaryotic translation initiation factor 4E-2 (eIF4E-2) (eIF-4E-2)
(mRNA cap-binding protein) (eIF-(iso)4F 25 kDa subunit)
(eIF-(iso)4F p28 subunit) (eIF4Eiso protein)
(eIF(iso)4E)
Length = 198
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +1
Query: 58 TYQDVIGEWGVFTGNFNVSRSTSKLVATKTLTLIYPNWAVDEFGNYGKWTLIYNQGFEET 237
T+ V WG+ F S+ T+ + P W E N GKWT + +E
Sbjct: 55 TFDTVEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEA 114
Query: 238 I 240
+
Sbjct: 115 L 115
>sp|P40547|VID28_YEAST Vacuolar import and degradation protein VID28 (Glucose-induced
degradation protein 5)
Length = 921
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 228 KTLIINKSPFSVITKFINSPIWINKS*CF-CSHQFTCRTRHV 106
K ++ K P ++I FIN P W ++ CF TC +R +
Sbjct: 620 KFQLLAKIPMNLILDFINDPCWAVQAQCFQLLRNLTCNSRKI 661
>sp|Q84424|MCE_PBCV1 mRNA capping enzyme (mRNA guanylyltransferase) (GTP--RNA
guanylyltransferase)
Length = 330
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 52 DCTYQDVIGEWGVFTGNFNVSRSTSKLVATKTLTLIYPNWAVDEFGNYGKW 204
+C + D G W G + +++ +L KTL I N +DE + KW
Sbjct: 281 ECGFAD--GTWKYIQGRSDKNQANDRLTYEKTLLNIEENITIDELLDLFKW 329
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,350,076
Number of Sequences: 369166
Number of extensions: 590956
Number of successful extensions: 1448
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)