Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H20
(651 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 200 3e-51
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 199 5e-51
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 199 7e-51
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 197 3e-50
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 197 3e-50
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 195 7e-50
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 195 7e-50
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 195 1e-49
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 194 1e-49
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 192 5e-49
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 200 bits (508), Expect = 3e-51
Identities = 110/151 (72%), Positives = 117/151 (77%), Gaps = 3/151 (1%)
Frame = +2
Query: 113 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 292
PIY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 5 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 64
Query: 293 YGLVVAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQ 463
YGLVVAVLIA + NYT+ K H IGIVGDAGVRGTAQQ
Sbjct: 65 YGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 124
Query: 464 PRLFVGMILILIFAEVLGLYGLIVALILSTK 556
PRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 125 PRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 199 bits (506), Expect = 5e-51
Identities = 109/148 (73%), Positives = 117/148 (79%)
Frame = +2
Query: 113 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 292
P Y+ FFGVMG +SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 8 PEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 67
Query: 293 YGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 472
YGLVVAVLIA + T+ +S IGIVGDAGVRGTAQQPRL
Sbjct: 68 YGLVVAVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 127
Query: 473 FVGMILILIFAEVLGLYGLIVALILSTK 556
FVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 128 FVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 199 bits (505), Expect = 7e-51
Identities = 109/151 (72%), Positives = 117/151 (77%), Gaps = 3/151 (1%)
Frame = +2
Query: 113 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 292
PIY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 5 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 64
Query: 293 YGLVVAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQ 463
YGLVVAVLIA + NYT+ + H IGIVGDAGVRGTAQQ
Sbjct: 65 YGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 124
Query: 464 PRLFVGMILILIFAEVLGLYGLIVALILSTK 556
PRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 125 PRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 197 bits (500), Expect = 3e-50
Identities = 108/148 (72%), Positives = 118/148 (79%)
Frame = +2
Query: 113 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 292
P Y+ FFGV+G ++AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAI
Sbjct: 7 PEYSAFFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 66
Query: 293 YGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 472
YGLVVAVLIA + + ++ KS IGIVGDAGVRGTAQQPRL
Sbjct: 67 YGLVVAVLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 126
Query: 473 FVGMILILIFAEVLGLYGLIVALILSTK 556
FVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 127 FVGMILILIFAEVLGLYGLIVALILSTK 154
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 197 bits (500), Expect = 3e-50
Identities = 107/151 (70%), Positives = 118/151 (78%), Gaps = 2/151 (1%)
Frame = +2
Query: 110 EPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIA 289
+P+Y PFFGVMG +A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIA
Sbjct: 7 KPVYGPFFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIA 66
Query: 290 IYGLVVAVLIAQQIG--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQ 463
IYGLVVAVLIA + T Y++ K H IGIVGDAGVRGTAQQ
Sbjct: 67 IYGLVVAVLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQ 126
Query: 464 PRLFVGMILILIFAEVLGLYGLIVALILSTK 556
PRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 127 PRLFVGMILILIFAEVLGLYGLIVAIYLYTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 195 bits (496), Expect = 7e-50
Identities = 107/155 (69%), Positives = 120/155 (77%), Gaps = 2/155 (1%)
Frame = +2
Query: 98 MATTEPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMA 277
+++ PIY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMA
Sbjct: 5 VSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMA 64
Query: 278 GIIAIYGLVVAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRG 451
GIIAIYGLVVAVLIA + + Y++ + H IGIVGDAGVRG
Sbjct: 65 GIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 124
Query: 452 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 556
TAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 125 TAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 195 bits (496), Expect = 7e-50
Identities = 107/152 (70%), Positives = 117/152 (76%)
Frame = +2
Query: 101 ATTEPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAG 280
A + P Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAG
Sbjct: 4 AKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAG 63
Query: 281 IIAIYGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQ 460
IIAIYGLVVAVLIA + ++ +S IGIVGDAGVRGTAQ
Sbjct: 64 IIAIYGLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 123
Query: 461 QPRLFVGMILILIFAEVLGLYGLIVALILSTK 556
QPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 124 QPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 195 bits (495), Expect = 1e-49
Identities = 107/152 (70%), Positives = 116/152 (76%)
Frame = +2
Query: 101 ATTEPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAG 280
A P Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAG
Sbjct: 4 AKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAG 63
Query: 281 IIAIYGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQ 460
IIAIYGLVVAVLIA + ++ +S IGIVGDAGVRGTAQ
Sbjct: 64 IIAIYGLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 123
Query: 461 QPRLFVGMILILIFAEVLGLYGLIVALILSTK 556
QPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 124 QPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 194 bits (494), Expect = 1e-49
Identities = 107/148 (72%), Positives = 115/148 (77%)
Frame = +2
Query: 113 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 292
P Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAI
Sbjct: 8 PEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAI 67
Query: 293 YGLVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRL 472
YGLVVAVLIA + + ++ KS IGIVGDAGVRGTAQQPRL
Sbjct: 68 YGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL 127
Query: 473 FVGMILILIFAEVLGLYGLIVALILSTK 556
FVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 128 FVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 192 bits (489), Expect = 5e-49
Identities = 105/150 (70%), Positives = 116/150 (77%), Gaps = 2/150 (1%)
Frame = +2
Query: 113 PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAI 292
P+Y+PFFGVMG SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAI
Sbjct: 7 PMYSPFFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAI 66
Query: 293 YGLVVAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQP 466
YGLVVAVLIA ++ YT+ + H IGIVGDAGVRGTAQQP
Sbjct: 67 YGLVVAVLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP 126
Query: 467 RLFVGMILILIFAEVLGLYGLIVALILSTK 556
RL+VGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 127 RLYVGMILILIFAEVLGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,223,700
Number of Sequences: 369166
Number of extensions: 1260414
Number of successful extensions: 4092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4013
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)