Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_H05
(646 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1) 240 3e-63
sp|Q9R013|CATF_MOUSE Cathepsin F precursor 231 1e-60
sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF) 226 4e-59
sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 p... 224 1e-58
sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor 182 6e-46
sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgo... 173 4e-43
sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (... 169 4e-42
sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 precursor 169 7e-42
sp|P43295|A494_ARATH Probable cysteine proteinase A494 prec... 167 2e-41
sp|P14658|CYSP_TRYBB Cysteine proteinase precursor 167 2e-41
>sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1)
Length = 319
Score = 240 bits (612), Expect = 3e-63
Identities = 109/190 (57%), Positives = 140/190 (73%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGLPSQAYKVIQQMGGLETES 182
WAFSTTGN+E QWF +T +L+SLSEQQLVDCD +D+GCNGGLPS AY+ I +MGGL E
Sbjct: 130 WAFSTTGNVESQWFRKTGKLLSLSEQQLVDCDGLDDGCNGGLPSNAYESIIKMGGLMLED 189
Query: 183 DYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGG 362
+YPY A + C L +AVYIN S ++ ET +AAW N IS+G+NA +QFY+ G
Sbjct: 190 NYPYDAKNEKCHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHG 249
Query: 363 ISHPFKIFCNPDHLDHGVLIVGFNTTSSG*PFWIVKNSWGPGWGEDGYYRVFRGTGVCGL 542
ISHP+ IFC+ LDH VL+VG+ + PFWIVKNSWG WGE+GY+R++RG G CG+
Sbjct: 250 ISHPWWIFCSKYLLDHAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGI 309
Query: 543 NKMPTSAIIH 572
N + TSA+I+
Sbjct: 310 NTVATSAMIY 319
>sp|Q9R013|CATF_MOUSE Cathepsin F precursor
Length = 462
Score = 231 bits (589), Expect = 1e-60
Identities = 102/190 (53%), Positives = 135/190 (71%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGLPSQAYKVIQQMGGLETES 182
WAFS TGN+EGQWF+ L+SLSEQ+L+DCD VD+ C GGLPS AY I+ +GGLETE
Sbjct: 274 WAFSVTGNVEGQWFLNRGTLLSLSEQELLDCDKVDKACLGGLPSNAYAAIKNLGGLETED 333
Query: 183 DYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGG 362
DY Y+ +TC VYIN S + +E +AAW + GPIS+ INAF MQFYR G
Sbjct: 334 DYGYQGHVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQFYRHG 393
Query: 363 ISHPFKIFCNPDHLDHGVLIVGFNTTSSG*PFWIVKNSWGPGWGEDGYYRVFRGTGVCGL 542
I+HPF+ C+P +DH VL+VG+ S+ P+W +KNSWG WGE+GYY ++RG+G CG+
Sbjct: 394 IAHPFRPLCSPWFIDHAVLLVGYGNRSN-IPYWAIKNSWGSDWGEEGYYYLYRGSGACGV 452
Query: 543 NKMPTSAIIH 572
N M +SA+++
Sbjct: 453 NTMASSAVVN 462
>sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF)
Length = 484
Score = 226 bits (576), Expect = 4e-59
Identities = 101/189 (53%), Positives = 130/189 (68%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGLPSQAYKVIQQMGGLETES 182
WAFS TGN+EGQWF+ L+SLSEQ+L+DCD +D+ C GGLPS AY I+ +GGLETE
Sbjct: 296 WAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETED 355
Query: 183 DYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQFYRGG 362
DY Y+ ++C K VYIN S + +E +AAW + GPIS+ INAF MQFYR G
Sbjct: 356 DYSYQGHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHG 415
Query: 363 ISHPFKIFCNPDHLDHGVLIVGFNTTSSG*PFWIVKNSWGPGWGEDGYYRVFRGTGVCGL 542
IS P + C+P +DH VL+VG+ S PFW +KNSWG WGE GYY + RG+G CG+
Sbjct: 416 ISRPLRPLCSPWLIDHAVLLVGYGNRSDV-PFWAIKNSWGTDWGEKGYYYLHRGSGACGV 474
Query: 543 NKMPTSAII 569
N M +SA++
Sbjct: 475 NTMASSAVV 483
>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 precursor
Length = 614
Score = 224 bits (572), Expect = 1e-58
Identities = 104/195 (53%), Positives = 134/195 (68%), Gaps = 6/195 (3%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGLPSQAYKVIQQMGGLETES 182
WAFS TGNIEG + ++T L SEQ+L+DCDT D CNGGL AYK I+ +GGLE E+
Sbjct: 419 WAFSVTGNIEGLYAVKTGELKEFSEQELLDCDTTDSACNGGLMDNAYKAIKDIGGLEYEA 478
Query: 183 DYPYKADRKTCMLDKSKIAVYINGSESI-DSSETTMAAWCSINGPISIGINAFAMQFYRG 359
+YPYKA + C +++ V + G + +ET M W NGPISIGINA AMQFYRG
Sbjct: 479 EYPYKAKKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRG 538
Query: 360 GISHPFKIFCNPDHLDHGVLIVGFNTTS-----SG*PFWIVKNSWGPGWGEDGYYRVFRG 524
G+SHP+K C+ +LDHGVL+VG+ + P+WIVKNSWGP WGE GYYRV+RG
Sbjct: 539 GVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRG 598
Query: 525 TGVCGLNKMPTSAII 569
CG+++M TSA++
Sbjct: 599 DNTCGVSEMATSAVL 613
>sp|P04988|CYSP1_DICDI Cysteine proteinase 1 precursor
Length = 343
Score = 182 bits (462), Expect = 6e-46
Identities = 95/204 (46%), Positives = 124/204 (60%), Gaps = 15/204 (7%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCD----------TVDEGCNGGLPSQAYKVI 152
W+FSTTGN+EGQ FI +LVSLSEQ LVDCD DEGCNGGL AY I
Sbjct: 143 WSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGCNGGLQPNAYNYI 202
Query: 153 QQMGGLETESDYPYKADRKT-CMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGI 329
+ GG++TES YPY A+ T C + + I I+ I +ET MA + GP++I
Sbjct: 203 IKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAA 262
Query: 330 NAFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSS----G*PFWIVKNSWGPGWGE 497
+A QFY GG+ F I CNP+ LDHG+LIVG++ ++ P+WIVKNSWG WGE
Sbjct: 263 DAVEWQFYIGGV---FDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGE 319
Query: 498 DGYYRVFRGTGVCGLNKMPTSAII 569
GY + RG CG++ +++II
Sbjct: 320 QGYIYLRRGKNTCGVSNFVSTSII 343
>sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgor-responsive protein 15A)
Length = 363
Score = 173 bits (438), Expect = 4e-43
Identities = 88/198 (44%), Positives = 117/198 (59%), Gaps = 15/198 (7%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTV---------DEGCNGGLPSQAYKVIQ 155
WAFSTTG +EG ++ T +LVSLSEQQLVDCD V D GCNGGL + A++ +
Sbjct: 157 WAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLL 216
Query: 156 QMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINA 335
+ GG+ E DY Y +C DKSK+ ++ + E +AA NGP+++ INA
Sbjct: 217 ESGGVVQEKDYAYTGRDGSCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINA 276
Query: 336 FAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTS------SG*PFWIVKNSWGPGWGE 497
MQ Y G+S P+ C LDHGVL+VGF + P+WI+KNSWG WGE
Sbjct: 277 AWMQTYMSGVSCPY--VCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGE 334
Query: 498 DGYYRVFRGTGVCGLNKM 551
GYY++ RG VCG++ M
Sbjct: 335 QGYYKICRGRNVCGVDSM 352
>sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (RD19)
Length = 368
Score = 169 bits (429), Expect = 4e-42
Identities = 90/199 (45%), Positives = 120/199 (60%), Gaps = 16/199 (8%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCD---------TVDEGCNGGLPSQAYKVIQ 155
W+FS TG +EG F+ T +LVSLSEQQLVDCD + D GCNGGL + A++
Sbjct: 160 WSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTL 219
Query: 156 QMGGLETESDYPYKA-DRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGIN 332
+ GGL E DYPY D KTC LDKSKI ++ I E +AA NGP+++ IN
Sbjct: 220 KTGGLMKEEDYPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAIN 279
Query: 333 AFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSG*------PFWIVKNSWGPGWG 494
A MQ Y GG+S P+ C L+HGVL+VG+ P+WI+KNSWG WG
Sbjct: 280 AGYMQTYIGGVSCPY--ICTR-RLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWG 336
Query: 495 EDGYYRVFRGTGVCGLNKM 551
E+G+Y++ +G +CG++ M
Sbjct: 337 ENGFYKICKGRNICGVDSM 355
>sp|Q10716|CYSP1_MAIZE Cysteine proteinase 1 precursor
Length = 371
Score = 169 bits (427), Expect = 7e-42
Identities = 89/209 (42%), Positives = 123/209 (58%), Gaps = 19/209 (9%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCD---------TVDEGCNGGLPSQAYKVIQ 155
W+FS +G +EG ++ T +L LSEQQ VDCD + D GCNGGL + A+ +Q
Sbjct: 162 WSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQ 221
Query: 156 QMGGLETESDYPYKADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINA 335
+ GGLE+E DYPY C DKSKI + + E ++A +GP++IGINA
Sbjct: 222 KAGGLESEKDYPYTGSDGKCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINA 281
Query: 336 FAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTS------SG*PFWIVKNSWGPGWGE 497
MQ Y GG+S P+ C HLDHGVL+VG+ + P+WI+KNSWG WGE
Sbjct: 282 AYMQTYIGGVSCPY--ICG-RHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGE 338
Query: 498 DGYYRVFRGTGV---CGLNKM-PTSAIIH 572
+GYY++ RG+ V CG++ M T + +H
Sbjct: 339 NGYYKICRGSNVRNKCGVDSMVSTVSAVH 367
>sp|P43295|A494_ARATH Probable cysteine proteinase A494 precursor
Length = 361
Score = 167 bits (424), Expect = 2e-41
Identities = 86/199 (43%), Positives = 123/199 (61%), Gaps = 16/199 (8%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCD---------TVDEGCNGGLPSQAYKVIQ 155
W+FSTTG +EG F+ T +LVSLSEQQLVDCD + D GCNGGL + A++
Sbjct: 157 WSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTL 216
Query: 156 QMGGLETESDYPYKA-DRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGIN 332
+ GGL E DYPY D +C LD+SKI ++ + +E +AA NGP+++ IN
Sbjct: 217 KTGGLMREKDYPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAIN 276
Query: 333 AFAMQFYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSG*------PFWIVKNSWGPGWG 494
A MQ Y GG+S P+ C+ L+HGVL+VG+ + P+WI+KNSWG WG
Sbjct: 277 AAYMQTYIGGVSCPY--ICSR-RLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWG 333
Query: 495 EDGYYRVFRGTGVCGLNKM 551
E+G+Y++ +G +CG++ +
Sbjct: 334 ENGFYKICKGRNICGVDSL 352
>sp|P14658|CYSP_TRYBB Cysteine proteinase precursor
Length = 450
Score = 167 bits (423), Expect = 2e-41
Identities = 85/194 (43%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Frame = +3
Query: 3 WAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGLPSQAYK-VIQQMGG-LET 176
WAFST GNIEGQW + LVSLSEQ LV CDT+D GCNGGL A+ ++ GG + T
Sbjct: 151 WAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDSGCNGGLMDNAFNWIVNSNGGNVFT 210
Query: 177 ESDYPY---KADRKTCMLDKSKIAVYINGSESIDSSETTMAAWCSINGPISIGINAFAMQ 347
E+ YPY ++ C ++ +I I + E +AA+ + NGP++I ++A +
Sbjct: 211 EASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDAESFM 270
Query: 348 FYRGGISHPFKIFCNPDHLDHGVLIVGFNTTSSG*PFWIVKNSWGPGWGEDGYYRVFRGT 527
Y GGI C LDHGVL+VG+N S+ P+WI+KNSW WGEDGY R+ +GT
Sbjct: 271 DYNGGI----LTSCTSKQLDHGVLLVGYNDNSNP-PYWIIKNSWSNMWGEDGYIRIEKGT 325
Query: 528 GVCGLNKMPTSAII 569
C +N+ +SA++
Sbjct: 326 NQCLMNQAVSSAVV 339
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,104,626
Number of Sequences: 369166
Number of extensions: 1454530
Number of successful extensions: 3467
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3133
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)