Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_G21
(296 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB 30 1.7
sp|O78687|NU4M_CARAU NADH-ubiquinone oxidoreductase chain 4... 28 6.4
sp|Q9MIY1|NU4M_BRARE NADH-ubiquinone oxidoreductase chain 4... 28 6.4
sp|P44626|LNT_HAEIN Apolipoprotein N-acyltransferase (ALP N... 28 8.4
>sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB
Length = 373
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 22 WADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEEHRVDSVE 201
+A GE++ K GG AR + VVVG G + Y HR+D++E
Sbjct: 213 YATGEHLRKAVPSGG---------ARHPIEFYVVVGDEIAGIEAGVYHYNVRHHRLDAIE 263
Query: 202 VLCCSTK 222
+ S K
Sbjct: 264 IASTSLK 270
>sp|O78687|NU4M_CARAU NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 460
Score = 28.1 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3
Query: 183 MFFPSIWKITTTMLWKIFSNNN-LSANITSCNVKWLPIIYTTNNSSFWYVFPIS-PSPFV 10
M FP+IW + LW + ++ L A+I+ KW T+++++ P+S P +
Sbjct: 10 MLFPTIWLTSPKWLWTTTTAHSLLIASISLMWFKWTSETGWTSSNTYLATDPLSTPLLVL 69
Query: 9 TLW 1
T W
Sbjct: 70 TCW 72
>sp|Q9MIY1|NU4M_BRARE NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 460
Score = 28.1 bits (61), Expect = 6.4
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 183 MFFPSIWKITTTMLWKIFSNNN-LSANITSCNVKWLPIIYTTNNSSFWYVFPIS-PSPFV 10
M FP+IW ++ LW + N+ L A I+ +KW ++S+ P+S P +
Sbjct: 10 MLFPTIWLSSSKWLWTTTTMNSFLIAFISLTWLKWTSDTGWNASNSYMAADPLSTPLLVL 69
Query: 9 TLW 1
T W
Sbjct: 70 TCW 72
>sp|P44626|LNT_HAEIN Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (Copper
homeostasis protein cutE homolog)
Length = 522
Score = 27.7 bits (60), Expect = 8.4
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = -3
Query: 204 HFNTVNTMFFPSIWKITTTMLWKIFSNNNLSANITSCNVKWLPIIYTTNNSSFWYVFPI- 28
HF + + F IW +T + IF+ WL YT +S F+ + PI
Sbjct: 120 HFKVQSAVIFAVIWTLTEFLRGWIFT-----------GFPWLQFGYTQIDSPFYGIAPIF 168
Query: 27 --SPSPFVTLW 1
+ F T+W
Sbjct: 169 GVTGLTFFTVW 179
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,610,257
Number of Sequences: 369166
Number of extensions: 681271
Number of successful extensions: 2209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2205
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)