Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_F21
(548 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25708|NUBM_BOVIN NADH-ubiquinone oxidoreductase 51 kDa ... 328 5e-90
sp|Q91YT0|NUBM_MOUSE NADH-ubiquinone oxidoreductase 51 kDa ... 326 3e-89
sp|P49821|NUBM_HUMAN NADH-ubiquinone oxidoreductase 51 kDa ... 326 3e-89
sp|Q8HXQ9|NUBM_MACFA NADH-ubiquinone oxidoreductase 51 kDa ... 323 1e-88
sp|P24917|NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa ... 308 4e-84
sp|Q92406|NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa ... 294 1e-79
sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase chain F 1... 271 8e-73
sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase chain F (N... 262 5e-70
sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase chain F (N... 260 1e-69
sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 (N... 260 2e-69
>sp|P25708|NUBM_BOVIN NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 328 bits (841), Expect = 5e-90
Identities = 149/182 (81%), Positives = 168/182 (92%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
ALIESIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICRRGG WFA FGRERN
Sbjct: 211 ALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERN 270
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
GTKLFNISGHVNNPCTVEE MS+PLK LIEKH G+ GGWDNLLAVIPGGSSTPLIPK+
Sbjct: 271 SGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKS 330
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
VC++VLMDFD+L++AQT LGTAA+IVM++ D+V+ IARL++FYKHESCGQCTPCREG
Sbjct: 331 VCETVLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVD 390
Query: 543 WM 548
WM
Sbjct: 391 WM 392
>sp|Q91YT0|NUBM_MOUSE NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 326 bits (835), Expect = 3e-89
Identities = 149/182 (81%), Positives = 168/182 (92%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
ALIESIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICRRGG WFA FGRERN
Sbjct: 211 ALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERN 270
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
GTKLFNISGHVN+PCTVEE MS+PLK LIEKH G+ GGWDNLLAVIPGGSSTPLIPK+
Sbjct: 271 SGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKS 330
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
VC++VLMDFD+LV+AQT LGTAA+IVM++ D+V+ IARL++FYKHESCGQCTPCREG
Sbjct: 331 VCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVD 390
Query: 543 WM 548
WM
Sbjct: 391 WM 392
>sp|P49821|NUBM_HUMAN NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 326 bits (835), Expect = 3e-89
Identities = 149/182 (81%), Positives = 168/182 (92%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
ALIESIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICRRGG WFA FGRERN
Sbjct: 211 ALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERN 270
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
GTKLFNISGHVN+PCTVEE MS+PLK LIEKH G+ GGWDNLLAVIPGGSSTPLIPK+
Sbjct: 271 SGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKS 330
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
VC++VLMDFD+LV+AQT LGTAA+IVM++ D+V+ IARL++FYKHESCGQCTPCREG
Sbjct: 331 VCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVD 390
Query: 543 WM 548
WM
Sbjct: 391 WM 392
>sp|Q8HXQ9|NUBM_MACFA NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 323 bits (829), Expect = 1e-88
Identities = 148/182 (81%), Positives = 168/182 (92%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
ALIESIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICRRGG WFA FGRERN
Sbjct: 211 ALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERN 270
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
GTKLFNISGHVN+PCTVEE MS+PLK LIEKH G+ GGWDNLLAVIPGGSSTPLIPK+
Sbjct: 271 SGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKS 330
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
VC++VLMDFD+LV+AQT LGTAA+IVM++ D+V+ IARL++FYK+ESCGQCTPCREG
Sbjct: 331 VCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKYESCGQCTPCREGVD 390
Query: 543 WM 548
WM
Sbjct: 391 WM 392
>sp|P24917|NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD)
Length = 493
Score = 308 bits (790), Expect = 4e-84
Identities = 140/181 (77%), Positives = 163/181 (90%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
+LIES+EGK GKPRLKPPFPA +GLFGCP+TV+NVETVAVAPTICRRGG WFA FGRERN
Sbjct: 223 SLIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERN 282
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
+GTKLF ISGHVNNPCTVEE MSIP++ LI+KHC G+ GGWDNLLAVIPGGSSTP++PK+
Sbjct: 283 QGTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKH 342
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
+CD+ LMDFD+L ++Q+ LGTAALIVM+K DVVR I+RL FY+HESCGQCTPCREG+
Sbjct: 343 ICDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSK 402
Query: 543 W 545
W
Sbjct: 403 W 403
>sp|Q92406|NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD)
Length = 496
Score = 294 bits (752), Expect = 1e-79
Identities = 134/181 (74%), Positives = 156/181 (86%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
+LIESIEGK GKPRLKPPFPA +GLFGCP+TV+NVETVAV PTI RRG WF+ FGRERN
Sbjct: 225 SLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERN 284
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
GTKLF ISGHVNNPCTVEE MSI L+ +I++HC G+ GGWDNLLAVIPGGSSTP++PK
Sbjct: 285 AGTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKT 344
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
+CD LMDFD+L ++Q+ LGTAA+IVM+K D+VR I+RL FYKHESCGQCTPCREG+
Sbjct: 345 ICDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSK 404
Query: 543 W 545
W
Sbjct: 405 W 405
>sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase chain F 1 (NADH dehydrogenase I, chain
F 1) (NDH-1, chain F 1)
Length = 434
Score = 271 bits (693), Expect = 8e-73
Identities = 122/182 (67%), Positives = 146/182 (80%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
AL+ES+EGK+G+PRLKPPFPA++GL+GCPTTV+NVE++AV PTI RRG W+ FGR N
Sbjct: 177 ALLESLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNN 236
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
GTKL+++SGHVN PCTVE+ MSIP LIEKHC GI GGWDNLLAVIPGGSS P +P
Sbjct: 237 HGTKLYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGA 296
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
+MD+D L E + LGTAA+IVM+K D+++ I RL FYKHESCGQCTPCREGTG
Sbjct: 297 QMKDAIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTG 356
Query: 543 WM 548
WM
Sbjct: 357 WM 358
>sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 431
Score = 262 bits (669), Expect = 5e-70
Identities = 117/182 (64%), Positives = 144/182 (79%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
AL+ES+EGK+G PR+KPPFPA GL+GCPTTV+NVE++AV PTI RRGG WFA GR N
Sbjct: 178 ALLESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGRPNN 237
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
G KLF +SGHVN PC VEE MSI +K LIEKH G+ GGW NL AVIPGG+S P+IP +
Sbjct: 238 TGVKLFAMSGHVNTPCVVEEAMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPVIPAH 297
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
+C+ +MD+D + E Q++ GTA LIVM++ D+++ IARL F+KHESCGQCTPCREGT
Sbjct: 298 LCEDAIMDYDGMREKQSSFGTACLIVMDQQTDIIKAIARLSKFFKHESCGQCTPCREGTS 357
Query: 543 WM 548
WM
Sbjct: 358 WM 359
>sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 421
Score = 260 bits (665), Expect = 1e-69
Identities = 120/182 (65%), Positives = 143/182 (78%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
AL+ES+EGK+G PRLKPPFPA GL+GCPTT++NVE++AV PTI RRG WFA G+ N
Sbjct: 177 ALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNN 236
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
GTK+F ISGHVN PC VEE M I LK LIEK+ G+ GGWDNL A+IPGGSS PL+PK+
Sbjct: 237 TGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS 296
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
+C+ V MDFDSL A + LGT +IVM++ D++ IARL FY HESCGQCTPCREGTG
Sbjct: 297 LCE-VDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTG 355
Query: 543 WM 548
WM
Sbjct: 356 WM 357
>sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 (NADH dehydrogenase I, chain 1)
(NDH-1, chain 1)
Length = 431
Score = 260 bits (664), Expect = 2e-69
Identities = 115/182 (63%), Positives = 144/182 (79%)
Frame = +3
Query: 3 ALIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICRRGGEWFAQFGRERN 182
AL+ES+EGK+G PR+KPPFPA GL+GCPTTV+NVE++AV PTI RRG EWFA FGR N
Sbjct: 178 ALLESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNN 237
Query: 183 KGTKLFNISGHVNNPCTVEETMSIPLKALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKN 362
G KLF ++GHVN PC VEE MSIP++ LIEKH GI GGW NL AVIPGG+S P++
Sbjct: 238 AGVKLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAE 297
Query: 363 VCDSVLMDFDSLVEAQTALGTAALIVMNKDADVVRCIARLMDFYKHESCGQCTPCREGTG 542
C++ +MD+D + + +++ GTA +IVM++ DVV+ I RL F+KHESCGQCTPCREGTG
Sbjct: 298 QCENAIMDYDGMRDVRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTG 357
Query: 543 WM 548
WM
Sbjct: 358 WM 359
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,163,848
Number of Sequences: 369166
Number of extensions: 1189956
Number of successful extensions: 3137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3117
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)