Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E20
(200 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 61 7e-10
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 61 7e-10
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 61 7e-10
sp|P90519|EF1A_CRYPV Elongation factor 1-alpha (EF-1-alpha) 61 9e-10
sp|P54959|EF1A_BLAHO Elongation factor 1-alpha (EF-1-alpha) 61 9e-10
sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha)... 60 1e-09
sp|Q07051|EF1A_EIMBO Elongation factor 1-alpha (EF-1-alpha) 60 2e-09
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 60 2e-09
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 60 2e-09
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 60 2e-09
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 61.2 bits (147), Expect = 7e-10
Identities = 27/30 (90%), Positives = 30/30 (100%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 409 PLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 61.2 bits (147), Expect = 7e-10
Identities = 27/30 (90%), Positives = 30/30 (100%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 PMCVETFTEYPPLGRFAVRDMRQTVAVGVI 436
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 61.2 bits (147), Expect = 7e-10
Identities = 27/30 (90%), Positives = 30/30 (100%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 409 PMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P90519|EF1A_CRYPV Elongation factor 1-alpha (EF-1-alpha)
Length = 435
Score = 60.8 bits (146), Expect = 9e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +1
Query: 10 LNPVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
L P+CVE F++YPPLGRFAVRDMKQTVAVGVI
Sbjct: 391 LKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVI 422
>sp|P54959|EF1A_BLAHO Elongation factor 1-alpha (EF-1-alpha)
Length = 434
Score = 60.8 bits (146), Expect = 9e-10
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVETFS+YPPLGRFAVRDM+QTVAVG+I
Sbjct: 398 PMCVETFSDYPPLGRFAVRDMRQTVAVGII 427
>sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha) (Translation elongation
factor 1A) (Eukaryotic elongation factor 1A) (eEF1A)
Length = 458
Score = 60.5 bits (145), Expect = 1e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVE FSEYPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 PMCVEAFSEYPPLGRFAVRDMRQTVAVGVI 436
>sp|Q07051|EF1A_EIMBO Elongation factor 1-alpha (EF-1-alpha)
Length = 346
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVE+F EYPPLGRFAVRDMKQTVAVGVI
Sbjct: 294 PMCVESFIEYPPLGRFAVRDMKQTVAVGVI 323
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 59.7 bits (143), Expect = 2e-09
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 409 PMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 59.7 bits (143), Expect = 2e-09
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 409 PMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 59.7 bits (143), Expect = 2e-09
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 16 PVCVETFSEYPPLGRFAVRDMKQTVAVGVI 105
P+CVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 409 PMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,795,630
Number of Sequences: 369166
Number of extensions: 300021
Number of successful extensions: 1221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 68,354,980
effective HSP length: 38
effective length of database: 61,335,050
effective search space used: 1717381400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)