Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E10
(635 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 313 3e-85
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 293 2e-79
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 291 7e-79
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 291 7e-79
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 291 1e-78
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 291 1e-78
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 288 8e-78
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 286 2e-77
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 286 4e-77
sp|P34728|ARF_CRYNE ADP-ribosylation factor 284 1e-76
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 313 bits (801), Expect = 3e-85
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN
Sbjct: 91 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 460
RSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK
Sbjct: 151 RSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 183
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 293 bits (751), Expect = 2e-79
Identities = 144/151 (95%), Positives = 145/151 (96%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRERV EAREELMRML EDELRDAVLLVFANKQDLP AMN AE+TDKLGLHSLRN
Sbjct: 91 VVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRN 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNRS 454
RSWYIQATCATSGDGLYEGLDWLS LKNRS
Sbjct: 151 RSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 291 bits (746), Expect = 7e-79
Identities = 141/152 (92%), Positives = 146/152 (96%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRER+ EAREELMRML EDELRDAVLL+FANKQDLPNAMN AEITDKLGLHSLRN
Sbjct: 91 VVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRN 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNRSK 457
R+WYIQATCATSGDGLYEGLDWLS LKN ++
Sbjct: 151 RNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 291 bits (746), Expect = 7e-79
Identities = 142/150 (94%), Positives = 146/150 (97%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR+
Sbjct: 91 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNR 451
R+WYIQATCATSGDGLYEGLDWL+ LKN+
Sbjct: 151 RNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 291 bits (745), Expect = 1e-78
Identities = 142/150 (94%), Positives = 146/150 (97%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR+
Sbjct: 91 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNR 451
R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 151 RNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 291 bits (745), Expect = 1e-78
Identities = 142/150 (94%), Positives = 146/150 (97%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR+
Sbjct: 91 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNR 451
R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 151 RNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 288 bits (737), Expect = 8e-78
Identities = 141/150 (94%), Positives = 143/150 (95%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRERVNEAREEL RML EDELRDAVLLVF NKQDLPNAMN AEITDKLGLHSLR
Sbjct: 91 VVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQ 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNR 451
R+WYIQATCATSGDGLYEGLDWLS LKN+
Sbjct: 151 RNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 286 bits (733), Expect = 2e-77
Identities = 137/150 (91%), Positives = 145/150 (96%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRER++EA EEL RMLNEDELRDA+LLVFANKQDLPNAMN AEITDKLGLHSLR+
Sbjct: 91 VVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRH 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNR 451
R WYIQATCATSGDGLYEGL+WLST LKN+
Sbjct: 151 RQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 286 bits (731), Expect = 4e-77
Identities = 139/155 (89%), Positives = 145/155 (93%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDR+RVNEAREELMRML EDELRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR
Sbjct: 91 VVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK*N 466
R WYIQ+TCATSG+GLYEGLDWLS ++N+ N
Sbjct: 151 RHWYIQSTCATSGEGLYEGLDWLSNQIRNQKANCN 185
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 284 bits (727), Expect = 1e-76
Identities = 137/151 (90%), Positives = 143/151 (94%)
Frame = +2
Query: 2 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 181
TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG+IF
Sbjct: 31 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIF 90
Query: 182 VVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRN 361
VVDSNDRER+ EAREEL RML+EDELRDA+LLVFANKQDLPNAMN AEITDKLGLHSLR
Sbjct: 91 VVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQ 150
Query: 362 RSWYIQATCATSGDGLYEGLDWLSTTLKNRS 454
RSWYIQA CATSGDGLYEGL+WLS LK +S
Sbjct: 151 RSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,259,640
Number of Sequences: 369166
Number of extensions: 1146287
Number of successful extensions: 3740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3704
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)