Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E08
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 308 5e-84
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 308 9e-84
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 306 3e-83
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 305 5e-83
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 305 6e-83
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 304 1e-82
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 304 1e-82
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 303 2e-82
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 303 2e-82
sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenas... 301 7e-82
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 308 bits (790), Expect = 5e-84
Identities = 150/205 (73%), Positives = 172/205 (83%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFV+GVNHEKY+ SL +VSNASCTTNCLAPLAKV+ND+FGI EGLMTT+HA+TATQKTV
Sbjct: 127 PMFVVGVNHEKYENSLKVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHAFTATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGA QNIIP IPELNGKITGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+K AKYD+IKAAIK ASE MKGIL YT+++VVS DF GD +SSIFDA AGI L + FV
Sbjct: 247 LQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+LV+WYDNE GYS RV+DL+ HM++
Sbjct: 307 KLVSWYDNECGYSNRVVDLVCHMAS 331
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 308 bits (788), Expect = 9e-84
Identities = 149/205 (72%), Positives = 170/205 (82%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTV
Sbjct: 127 PMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FV
Sbjct: 247 LEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+L++WYDNE+GYS RV+DL+ HM++
Sbjct: 307 KLISWYDNEFGYSNRVVDLMAHMAS 331
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 306 bits (784), Expect = 3e-83
Identities = 149/205 (72%), Positives = 171/205 (83%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTV
Sbjct: 127 PMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+K AKYD+IK +K A++ +KGILAYTE++VVS DF GD +SS FDA AGI L D FV
Sbjct: 247 LEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+LV+WYDNEYGYS RV+DL+ HM++
Sbjct: 307 KLVSWYDNEYGYSNRVVDLMVHMAS 331
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 305 bits (782), Expect = 5e-83
Identities = 148/205 (72%), Positives = 169/205 (82%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTV
Sbjct: 127 PMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+K AKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FV
Sbjct: 247 LEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+L++WYDNE+GYS RV+DL+ HM++
Sbjct: 307 KLISWYDNEFGYSNRVVDLMVHMAS 331
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 305 bits (781), Expect = 6e-83
Identities = 148/205 (72%), Positives = 170/205 (82%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTV
Sbjct: 127 PMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+K AKYD+IK +K A+E +KGIL YTE++VVS DF GD +SS FDA AGI L D FV
Sbjct: 247 LEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+LV+WYDNE+GYS RV+DL+ HM++
Sbjct: 307 KLVSWYDNEFGYSNRVVDLMVHMAS 331
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 304 bits (779), Expect = 1e-82
Identities = 148/205 (72%), Positives = 169/205 (82%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTV
Sbjct: 127 PMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF +SS FDA AGI L D FV
Sbjct: 247 LEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+L++WYDNE+GYS RV+DL+ HM++
Sbjct: 307 KLISWYDNEFGYSNRVVDLMVHMAS 331
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 304 bits (779), Expect = 1e-82
Identities = 147/205 (71%), Positives = 170/205 (82%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTV
Sbjct: 127 PMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS K+WRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FV
Sbjct: 247 LEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+L++WYDNE+GYS RV+DL+ +M++
Sbjct: 307 KLISWYDNEFGYSNRVVDLMVYMAS 331
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 303 bits (777), Expect = 2e-82
Identities = 147/205 (71%), Positives = 169/205 (82%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKY+ +L IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTV
Sbjct: 116 PMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTV 175
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 176 DGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 235
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+K AKYDEIK +K ASE +KGIL YTE++VVS DF D +SS FDA AGI L D FV
Sbjct: 236 LEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFV 295
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+L++WYDNE+GYS RV+DL+ HM++
Sbjct: 296 KLISWYDNEFGYSNRVVDLMVHMAS 320
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 303 bits (776), Expect = 2e-82
Identities = 147/205 (71%), Positives = 170/205 (82%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTV
Sbjct: 127 PMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+K AKYD+IK +K A++ +KGIL YTE++VVS DF GD +SS FDA AGI L D FV
Sbjct: 247 LEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+LV+WYDNE+GYS RV+DL+ HM++
Sbjct: 307 KLVSWYDNEFGYSNRVVDLMVHMAS 331
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 301 bits (772), Expect = 7e-82
Identities = 146/205 (71%), Positives = 169/205 (82%)
Frame = +2
Query: 2 PMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTV 181
PMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTV
Sbjct: 127 PMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTV 186
Query: 182 DGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCK 361
DGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+VSVVDLTC+
Sbjct: 187 DGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
Query: 362 LKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFV 541
L+K AKYD+IK +K ASE +KGIL YTE++VVS DF + +SS FDA AGI L D FV
Sbjct: 247 LEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFV 306
Query: 542 RLVAWYDNEYGYSCRVIDLIQHMST 616
+L++WYDNEYGYS RV+DL+ +M++
Sbjct: 307 KLISWYDNEYGYSNRVVDLMAYMAS 331
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,930,545
Number of Sequences: 369166
Number of extensions: 1291417
Number of successful extensions: 3811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3614
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)