Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E07
(559 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (... 67 3e-11
sp|P42577|FRIS_LYMST Soma ferritin 62 7e-10
sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17) 60 3e-09
sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) ... 60 3e-09
sp|P19132|FRIH_RAT Ferritin heavy chain (Ferritin H subunit) 60 4e-09
sp|P29389|FRIH_CRIGR Ferritin heavy chain (Ferritin H subunit) 60 5e-09
sp|P09528|FRIH_MOUSE Ferritin heavy chain (Ferritin H subunit) 59 6e-09
sp|P17663|FRIH1_XENLA Ferritin heavy chain 1 59 8e-09
sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H) 58 1e-08
sp|Q9XT73|FRIH_TRIVU Ferritin heavy chain (Ferritin H subunit) 56 5e-08
>sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (B-ferritin) (XeBF) (GV-LCH)
Length = 177
Score = 67.0 bits (162), Expect = 3e-11
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)
Frame = +1
Query: 58 SKLINRMLQLCQGYRQVEMRCLTDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 237
+++ N LQ Y V D++ L F + F + + + + E+ ++FQ RG +V
Sbjct: 20 NRIANLELQASYLYLSVGYYFDRDDVALSKFSKFFRELSEKKRDHAEDFLKFQNKRGGRV 79
Query: 238 TWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRVIL 417
DVK + E G + + LN EK ++Q L L K+A + D + +LE +
Sbjct: 80 VLQDVKKPDDD-EWGNGTKAMEVALNLEKSINQAVLDLHKIATDHTDPHMQDYLEHEFLE 138
Query: 418 RQTKVIRTRANQLRDLKR---SEDDMTPFLTSKLMLDE 522
+ K+I+ + L +L+R +E+ M +L KL L E
Sbjct: 139 EEVKLIKKLGDHLTNLRRVKAAEEGMGEYLFDKLTLGE 176
>sp|P42577|FRIS_LYMST Soma ferritin
Length = 174
Score = 62.4 bits (150), Expect = 7e-10
Identities = 40/150 (26%), Positives = 73/150 (48%)
Frame = +1
Query: 58 SKLINRMLQLCQGYRQVEMRCLTDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 237
++ IN L Y+ + D++ L F + F+ + E + E+L+++Q RG ++
Sbjct: 19 NRQINMELYASYSYQSMAYYFDRDDVALPGFHKFFKHQSEEEREHAEKLMKYQNKRGGRI 78
Query: 238 TWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRVIL 417
D+K ++ E G +E Q L EK V+Q L L KL +D ++ FLE +
Sbjct: 79 VLQDIKKPDRD-EWGTGLEAMQVALQLEKSVNQSLLDLHKLCTSHDDAQMADFLESEFLE 137
Query: 418 RQTKVIRTRANQLRDLKRSEDDMTPFLTSK 507
Q K I+ ++ + +LKR + ++ K
Sbjct: 138 EQVKSIKELSDYITNLKRVGPGLGEYIFDK 167
>sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17)
Length = 176
Score = 60.5 bits (145), Expect = 3e-09
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Frame = +1
Query: 58 SKLINRMLQLCQGYRQVEMRCLTDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 237
++++N + Y + D++ L + F+ E + E+ +++Q RG +V
Sbjct: 18 NRMVNMEMYASYVYLSMSYYFDRDDVALHHVAKFFKEQSHEEREHAEKFLKYQNKRGGRV 77
Query: 238 TWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRVIL 417
D+K E+ E G +E Q L EK V+Q L L KLA +K D L FLE +
Sbjct: 78 VLQDIKKPERD-EWGNTLEATQAALQLEKTVNQALLDLHKLASDKVDAHLCDFLESEYLE 136
Query: 418 RQTKVIRTRANQLRDLKR---SEDDMTPFLTSKLMLDE 522
Q K ++ + + +LKR ++ M +L K L E
Sbjct: 137 EQVKAMKQLGDYITNLKRLGVPQNGMGEYLFDKHTLGE 174
>sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) (Ferritin X) (Ferritin H')
Length = 176
Score = 60.5 bits (145), Expect = 3e-09
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Frame = +1
Query: 67 INRML--QLCQGYRQVEMRCL--TDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQK 234
+NRML +L Y M D++ L + F+ E + E+ +++Q RG +
Sbjct: 17 VNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGR 76
Query: 235 VTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRVI 414
V D+K E+ E G +E Q L EK V+Q L L KLA +K D L FLE +
Sbjct: 77 VVLQDIKKPERD-EWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYL 135
Query: 415 LRQTKVIRTRANQLRDLKR---SEDDMTPFLTSKLMLDE 522
Q K I+ + + +LKR E+ M +L K + E
Sbjct: 136 EEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKE 174
>sp|P19132|FRIH_RAT Ferritin heavy chain (Ferritin H subunit)
Length = 182
Score = 60.1 bits (144), Expect = 4e-09
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Frame = +1
Query: 67 INRM--LQLCQGYRQVEMRCL--TDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQK 234
INR L+L Y + M C D++ L +F + F E + E+L++ Q RG +
Sbjct: 21 INRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR 80
Query: 235 VTWYDVK-PVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRV 411
+ D+K P ESG + + L+ EK V+Q L L KLA +KND L F+E
Sbjct: 81 IFLQDIKKPDRDDWESG--LNAMRCALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHY 138
Query: 412 ILRQTKVIRTRANQLRDLKR---SEDDMTPFLTSK 507
+ Q K I+ + + +L++ E M +L K
Sbjct: 139 LNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDK 173
>sp|P29389|FRIH_CRIGR Ferritin heavy chain (Ferritin H subunit)
Length = 186
Score = 59.7 bits (143), Expect = 5e-09
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Frame = +1
Query: 67 INRM--LQLCQGYRQVEMRCL--TDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQK 234
INR L+L Y + M C D++ L +F + F E + E+L++ Q RG +
Sbjct: 26 INRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR 85
Query: 235 VTWYDVK-PVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRV 411
+ D+K P ESG + + L+ EK V+Q L L KLA +KND L F+E
Sbjct: 86 IFLQDIKKPDRDDWESG--LNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHY 143
Query: 412 ILRQTKVIRTRANQLRDLKR---SEDDMTPFLTSK 507
+ Q K I+ + + +L++ E M +L K
Sbjct: 144 LNEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDK 178
>sp|P09528|FRIH_MOUSE Ferritin heavy chain (Ferritin H subunit)
Length = 182
Score = 59.3 bits (142), Expect = 6e-09
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Frame = +1
Query: 67 INRM--LQLCQGYRQVEMRCL--TDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQK 234
INR L+L Y + M C D++ L +F + F E + E+L++ Q RG +
Sbjct: 21 INRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR 80
Query: 235 VTWYDVK-PVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRV 411
+ D+K P ESG + + L+ EK V+Q L L KLA +KND L F+E
Sbjct: 81 IFLQDIKKPDRDDWESG--LNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETYY 138
Query: 412 ILRQTKVIRTRANQLRDLKR---SEDDMTPFLTSK 507
+ Q K I+ + + +L++ E M +L K
Sbjct: 139 LSEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDK 173
>sp|P17663|FRIH1_XENLA Ferritin heavy chain 1
Length = 176
Score = 58.9 bits (141), Expect = 8e-09
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Frame = +1
Query: 67 INRM--LQLCQGYRQVEMRCL--TDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQK 234
INRM L++ Y + M D++ L + F+ E + E+ +++Q RG +
Sbjct: 17 INRMVNLEMYASYVYLSMSYYFDRDDVALHHVAKFFKEQSHEEREHAEKFLKYQNKRGGR 76
Query: 235 VTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRVI 414
V D+K E+ E +E Q L EK V+Q L L KLA +K D L FLE +
Sbjct: 77 VVLQDIKKPERD-EWSNTLEAMQAALQLEKTVNQALLDLHKLASDKVDPQLCDFLESEYL 135
Query: 415 LRQTKVIRTRANQLRDLKR---SEDDMTPFLTSKLMLDE 522
Q K ++ + + +LKR ++ M +L K L E
Sbjct: 136 EEQVKAMKELGDYITNLKRLGVPQNGMGEYLFDKHTLGE 174
>sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H)
Length = 176
Score = 58.2 bits (139), Expect = 1e-08
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Frame = +1
Query: 67 INRM--LQLCQGYRQVEMRCL--TDELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQK 234
INRM ++L Y + M D++ L + + F+ E + E+L++ Q RG +
Sbjct: 17 INRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGR 76
Query: 235 VTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRVI 414
+ DVK E+ E G +E Q L EK V+Q L L K+ +K D L FLE +
Sbjct: 77 IVLQDVKKPERD-EWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPHLCDFLETEYL 135
Query: 415 LRQTKVIRTRANQLRDLKR---SEDDMTPFLTSKLMLDE 522
Q K I+ + + +LKR ++ M +L K + E
Sbjct: 136 EEQVKSIKQLGDYITNLKRLGLPQNGMGEYLFDKHTMGE 174
>sp|Q9XT73|FRIH_TRIVU Ferritin heavy chain (Ferritin H subunit)
Length = 183
Score = 56.2 bits (134), Expect = 5e-08
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Frame = +1
Query: 127 DELNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVK-PVEQHIESGKPVEIFQ 303
D++ L +F + F E + E+L++ Q RG ++ D+K P ESG + +
Sbjct: 45 DDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESG--LNAME 102
Query: 304 TILNFEKDVHQLTLRLCKLAWEKNDLSLSSFLEDRVILRQTKVIRTRANQLRDLKR---S 474
L+ EK+V+Q L L KLA +KND L F+E + Q K I+ + + +L++
Sbjct: 103 CALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLDEQVKAIKQLGDHVTNLRKMGAP 162
Query: 475 EDDMTPFLTSKLMLDE 522
+ M +L K L +
Sbjct: 163 DSGMAEYLFDKHTLGD 178
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,081,519
Number of Sequences: 369166
Number of extensions: 945274
Number of successful extensions: 2739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2739
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)