Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E03
(375 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondri... 198 4e-51
sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondri... 196 1e-50
sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondri... 196 1e-50
sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial... 196 2e-50
sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondri... 196 2e-50
sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein ho... 190 8e-49
sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondria... 180 1e-45
sp|O74261|HSP60_CANAL Heat shock protein 60, mitochondrial ... 166 2e-41
sp|P19882|HSP60_YEAST Heat shock protein 60, mitochondrial ... 164 6e-41
sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precu... 159 2e-39
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 198 bits (503), Expect = 4e-51
Identities = 95/125 (76%), Positives = 112/125 (89%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELEVIEGMKFDRGYISPYFIN+ KGAK EFQDA +L SEKKISS+QS+IP LE+ + Q+
Sbjct: 205 DELEVIEGMKFDRGYISPYFINSSKGAKVEFQDALLLLSEKKISSVQSIIPALELANAQR 264
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
KPL+I+AED+DGEAL+ LV+NRLK+GLQV AVKAPGFGDNRK+TL DMA ++GGIVFGD+
Sbjct: 265 KPLVIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKSTLTDMAIASGGIVFGDD 324
Query: 361 ADTYK 375
AD K
Sbjct: 325 ADLVK 329
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (P60 lymphocyte
protein) (HuCHA60)
Length = 573
Score = 196 bits (499), Expect = 1e-50
Identities = 94/123 (76%), Positives = 109/123 (88%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELE+IEGMKFDRGYISPYFINT KG KCEFQDA++L SEKKISSIQS++P LE+ + +
Sbjct: 209 DELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHR 268
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
KPL+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E
Sbjct: 269 KPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEE 328
Query: 361 ADT 369
T
Sbjct: 329 GLT 331
>sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
Length = 573
Score = 196 bits (498), Expect = 1e-50
Identities = 93/123 (75%), Positives = 109/123 (88%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELE+IEGMKFDRGYISPYFINT KG KCEFQDA++L SEKKISS+QS++P LE+ + +
Sbjct: 209 DELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHR 268
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
KPL+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E
Sbjct: 269 KPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEE 328
Query: 361 ADT 369
T
Sbjct: 329 GLT 331
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
Length = 573
Score = 196 bits (497), Expect = 2e-50
Identities = 92/120 (76%), Positives = 108/120 (90%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELE+IEGMKFDRGYISPYFINT KG KCEFQDA++L SEKKISS+QS++P LE+ + +
Sbjct: 209 DELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHR 268
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
KPL+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E
Sbjct: 269 KPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEE 328
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 196 bits (497), Expect = 2e-50
Identities = 92/120 (76%), Positives = 108/120 (90%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELE+IEGMKFDRGYISPYFINT KG KCEFQDA++L SEKKISS+QS++P LE+ + +
Sbjct: 209 DELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHR 268
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
KPL+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E
Sbjct: 269 KPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEE 328
>sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein homolog 2, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 576
Score = 190 bits (483), Expect = 8e-49
Identities = 91/122 (74%), Positives = 106/122 (86%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELEVIEGMKFDRGYISPYFINT KGAK EFQDA +LF EKKI S S++P LE+ + Q+
Sbjct: 209 DELEVIEGMKFDRGYISPYFINTSKGAKVEFQDALLLFCEKKIKSAPSIVPALELANAQR 268
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
KPL+I+AED++ EAL+ LV+NRLK+GLQVCAVKAPGFGDNRK L DMA +TGGIVFGDE
Sbjct: 269 KPLVIIAEDLEAEALSTLVVNRLKVGLQVCAVKAPGFGDNRKENLMDMAVATGGIVFGDE 328
Query: 361 AD 366
A+
Sbjct: 329 AN 330
>sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondrial precursor (Heat shock
protein 60) (HSP-60)
Length = 568
Score = 180 bits (456), Expect = 1e-45
Identities = 83/125 (66%), Positives = 106/125 (84%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELE+IEGMKFDRGYISPYFI + KGAK E++ A +L SEKKIS +Q ++P LE+ ++ +
Sbjct: 200 DELELIEGMKFDRGYISPYFITSAKGAKVEYEKALVLLSEKKISQVQDIVPALELANKLR 259
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
+PL+I+AEDVDGEALT LVLNRLK+GLQV A+KAPGFGDNRKNTL+DM +TG +FGD+
Sbjct: 260 RPLVIIAEDVDGEALTTLVLNRLKVGLQVVAIKAPGFGDNRKNTLKDMGIATGATIFGDD 319
Query: 361 ADTYK 375
++ K
Sbjct: 320 SNLIK 324
>sp|O74261|HSP60_CANAL Heat shock protein 60, mitochondrial precursor (60 kDa chaperonin)
(Protein Cpn60)
Length = 566
Score = 166 bits (419), Expect = 2e-41
Identities = 81/122 (66%), Positives = 99/122 (81%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELEV EGMKFDRG+ISPYFI K K EF++ IL SEKKISSIQ ++P LE+++Q +
Sbjct: 201 DELEVTEGMKFDRGFISPYFITNTKTGKVEFENPLILLSEKKISSIQDILPSLELSNQTR 260
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
+PLLI+AEDVDGEAL A +LN+L+ +QVCAVKAPGFGDNRKNTL D+A +GG VF +E
Sbjct: 261 RPLLIIAEDVDGEALAACILNKLRGQVQVCAVKAPGFGDNRKNTLGDIAILSGGTVFTEE 320
Query: 361 AD 366
D
Sbjct: 321 LD 322
>sp|P19882|HSP60_YEAST Heat shock protein 60, mitochondrial precursor (Stimulator factor I
66 kDa component) (P66) (CPN60)
Length = 572
Score = 164 bits (415), Expect = 6e-41
Identities = 78/122 (63%), Positives = 99/122 (81%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELEV EGM+FDRG+ISPYFI K +K EF+ +L SEKKISSIQ ++P LE+++Q +
Sbjct: 206 DELEVTEGMRFDRGFISPYFITDPKSSKVEFEKPLLLLSEKKISSIQDILPALEISNQSR 265
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
+PLLI+AEDVDGEAL A +LN+L+ ++VCAVKAPGFGDNRKNT+ D+A TGG VF +E
Sbjct: 266 RPLLIIAEDVDGEALAACILNKLRGQVKVCAVKAPGFGDNRKNTIGDIAVLTGGTVFTEE 325
Query: 361 AD 366
D
Sbjct: 326 LD 327
>sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precursor (p63)
Length = 569
Score = 159 bits (401), Expect = 2e-39
Identities = 76/122 (62%), Positives = 97/122 (79%)
Frame = +1
Query: 1 DELEVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQK 180
DELE+IEGMKFDRGY+SPYFIN++KG K E+ DA +L+SEKKI ++P LE+ + QK
Sbjct: 212 DELEIIEGMKFDRGYVSPYFINSNKGPKVEYNDALVLYSEKKIYYASQVVPALELANSQK 271
Query: 181 KPLLIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDE 360
KPL+I+AED DGE L+ LV+N+LK+GL V AVKAPGFG+ R N L DMA +TGG VF D+
Sbjct: 272 KPLVIIAEDYDGEPLSVLVVNKLKIGLPVVAVKAPGFGEYRTNALLDMAAATGG-VFEDD 330
Query: 361 AD 366
+
Sbjct: 331 TN 332
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,267,819
Number of Sequences: 369166
Number of extensions: 757454
Number of successful extensions: 2666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2648
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)