Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_D12
(705 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q68Y62|CPT1A_HORSE Carnitine O-palmitoyltransferase I, m... 150 3e-36
sp|P97742|CPT1A_MOUSE Carnitine O-palmitoyltransferase I, m... 149 7e-36
sp|P50416|CPT1A_HUMAN Carnitine O-palmitoyltransferase I, m... 144 3e-34
sp|P32198|CPT1A_RAT Carnitine O-palmitoyltransferase I, mit... 143 4e-34
sp|Q8HY46|CPT1B_PIG Carnitine O-palmitoyltransferase I, mit... 137 3e-32
sp|Q63704|CPT1B_RAT Carnitine O-palmitoyltransferase I, mit... 137 4e-32
sp|Q92523|CPT1B_HUMAN Carnitine O-palmitoyltransferase I, m... 135 8e-32
sp|Q924X2|CPT1B_MOUSE Carnitine O-palmitoyltransferase I, m... 134 3e-31
sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase I, m... 132 9e-31
sp|Q8BGD5|CPT1C_MOUSE Carnitine O-palmitoyltransferase I, m... 125 1e-28
>sp|Q68Y62|CPT1A_HORSE Carnitine O-palmitoyltransferase I, mitochondrial liver isoform
(CPT I) (CPTI-L) (Carnitine palmitoyltransferase 1A)
Length = 776
Score = 150 bits (379), Expect = 3e-36
Identities = 71/126 (56%), Positives = 94/126 (74%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
GKFC TYE+SMTRLFR+GRTETVRSCS+E +L++ D K+ F+ A+E HQ
Sbjct: 583 GKFCLTYEASMTRLFREGRTETVRSCSSESCNFVLAMVDPTQTVKQKLRLFKIASEKHQH 642
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
LYR AMTG G+DRHLFC++V+ K+L + S FL++ LSEPW+LSTSQTP Q + DL R
Sbjct: 643 LYRLAMTGSGIDRHLFCLYVVSKYLAVDSPFLKEVLSEPWRLSTSQTPQQQVELFDLERN 702
Query: 687 PDFISA 704
P+++S+
Sbjct: 703 PEYVSS 708
>sp|P97742|CPT1A_MOUSE Carnitine O-palmitoyltransferase I, mitochondrial liver isoform
(CPT I) (CPTI-L) (Carnitine palmitoyltransferase 1A)
Length = 773
Score = 149 bits (376), Expect = 7e-36
Identities = 69/125 (55%), Positives = 90/125 (72%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
GKFC TYE+SMTRLFR+GRTETVRSC+ E +L++ D + F+ A E HQ
Sbjct: 583 GKFCLTYEASMTRLFREGRTETVRSCTTESCNFVLAMMDPTTTAEQRFKLFKIACEKHQH 642
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
LYR AMTG G+DRHLFC++V+ K+L + S FL++ LSEPW+LSTSQTP Q + D +Y
Sbjct: 643 LYRLAMTGAGIDRHLFCLYVVSKYLAVDSPFLKEVLSEPWRLSTSQTPQQQVELFDFEKY 702
Query: 687 PDFIS 701
PD++S
Sbjct: 703 PDYVS 707
>sp|P50416|CPT1A_HUMAN Carnitine O-palmitoyltransferase I, mitochondrial liver isoform
(CPT I) (CPTI-L) (Carnitine palmitoyltransferase 1A)
Length = 773
Score = 144 bits (362), Expect = 3e-34
Identities = 66/126 (52%), Positives = 93/126 (73%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
GKFC TYE+SMTRLFR+GRTETVRSC+ E + + ++ D ++ F+ A+E HQ
Sbjct: 583 GKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPAQTVEQRLKLFKLASEKHQH 642
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
+YR AMTG G+DRHLFC++V+ K+L ++S FL++ LSEPW+LSTSQTP Q + DL
Sbjct: 643 MYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENN 702
Query: 687 PDFISA 704
P+++S+
Sbjct: 703 PEYVSS 708
>sp|P32198|CPT1A_RAT Carnitine O-palmitoyltransferase I, mitochondrial liver isoform
(CPT I) (CPTI-L) (Carnitine palmitoyltransferase 1A)
Length = 773
Score = 143 bits (361), Expect = 4e-34
Identities = 67/125 (53%), Positives = 89/125 (71%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
GKFC TYE+SMTRLFR+GRTETVRSC+ E + ++ D ++ F+ A E HQ
Sbjct: 583 GKFCLTYEASMTRLFREGRTETVRSCTMESCNFVQAMMDPKSTAEQRLKLFKIACEKHQH 642
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
LYR AMTG G+DRHLFC++V+ K+L + S FL++ LSEPW+LSTSQTP Q + D +
Sbjct: 643 LYRLAMTGAGIDRHLFCLYVVSKYLAVDSPFLKEVLSEPWRLSTSQTPQQQVELFDFEKN 702
Query: 687 PDFIS 701
PD++S
Sbjct: 703 PDYVS 707
>sp|Q8HY46|CPT1B_PIG Carnitine O-palmitoyltransferase I, mitochondrial muscle isoform
(CPT I) (CPTI-M) (Carnitine palmitoyltransferase 1B)
Length = 772
Score = 137 bits (345), Expect = 3e-32
Identities = 66/127 (51%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILS-IEDKNIPNTTKILHFRKAAEHHQ 503
GKFC TYE+SMTR+FR+GRTETVRSC+ E + + + +E + + + L FRKAA+ HQ
Sbjct: 583 GKFCLTYEASMTRMFREGRTETVRSCTRESTAFVQAMVEGRRVKADLQDL-FRKAAQKHQ 641
Query: 504 KLYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTR 683
+YR AMTG G+DRHLFC++V+ K+L + S FL + LSEPW+LSTSQ Q + D +
Sbjct: 642 NMYRLAMTGAGIDRHLFCLYVVSKYLGVSSPFLAEVLSEPWRLSTSQIAQFQIRMFDPNK 701
Query: 684 YPDFISA 704
YP+ + A
Sbjct: 702 YPNHLGA 708
>sp|Q63704|CPT1B_RAT Carnitine O-palmitoyltransferase I, mitochondrial muscle isoform
(CPT I) (CPTI-M) (Carnitine palmitoyltransferase 1B)
(Carnitine palmitoyltransferase I-like protein)
Length = 772
Score = 137 bits (344), Expect = 4e-32
Identities = 64/126 (50%), Positives = 89/126 (70%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
GKFC TYE+SMTR+FR+GRTETVRSC++E + + ++ + FRKA+E HQ
Sbjct: 583 GKFCLTYEASMTRMFREGRTETVRSCTSESTAFVRAMMTGSHKKQDLQDLFRKASEKHQN 642
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
+YR AMTG G+DRHLFC++++ K+L ++S FL++ LSEPW LSTSQ P Q D +Y
Sbjct: 643 MYRLAMTGAGIDRHLFCLYIVSKYLGVRSPFLDEVLSEPWSLSTSQIPQFQICMFDPKQY 702
Query: 687 PDFISA 704
P+ + A
Sbjct: 703 PNHLGA 708
>sp|Q92523|CPT1B_HUMAN Carnitine O-palmitoyltransferase I, mitochondrial muscle isoform
(CPT I) (CPTI-M) (Carnitine palmitoyltransferase 1B)
(Carnitine palmitoyltransferase I like protein)
Length = 772
Score = 135 bits (341), Expect = 8e-32
Identities = 62/126 (49%), Positives = 90/126 (71%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
GKFC TYE+SMTR+FR+GRTETVRSC++E + + ++ + + F+KAA+ HQ
Sbjct: 583 GKFCLTYEASMTRMFREGRTETVRSCTSESTAFVQAMMEGSHTKADLRDLFQKAAKKHQN 642
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
+YR AMTG G+DRHLFC++++ K+L + S FL + LSEPW+LSTSQ P Q + D ++
Sbjct: 643 MYRLAMTGAGIDRHLFCLYLVSKYLGVSSPFLAEVLSEPWRLSTSQIPQSQIRMFDPEQH 702
Query: 687 PDFISA 704
P+ + A
Sbjct: 703 PNHLGA 708
>sp|Q924X2|CPT1B_MOUSE Carnitine O-palmitoyltransferase I, mitochondrial muscle isoform
(CPT I) (CPTI-M) (Carnitine palmitoyltransferase 1B)
Length = 772
Score = 134 bits (336), Expect = 3e-31
Identities = 64/126 (50%), Positives = 86/126 (68%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
GKFC TYE+SMTR+FR+GRTETVRSC+ E + + ++ + FRKA+E HQ
Sbjct: 583 GKFCLTYEASMTRMFREGRTETVRSCTNESAAFVQAMMKGSHKKQDLQDLFRKASEKHQN 642
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
+YR AMTG G+DRHLFC++++ K+L + S FL + LSEPW LSTSQ P Q D +Y
Sbjct: 643 MYRLAMTGAGIDRHLFCLYIVSKYLGVSSPFLAEVLSEPWSLSTSQIPQFQICMFDPKQY 702
Query: 687 PDFISA 704
P+ + A
Sbjct: 703 PNHLGA 708
>sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase I, mitochondrial brain isoform
(Carnitine palmitoyltransferase 1C) (CPT IC)
Length = 803
Score = 132 bits (332), Expect = 9e-31
Identities = 61/126 (48%), Positives = 89/126 (70%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
G+FC TYES+MTRLF +GRTETVRSC+ E + ++EDK + + FR A + HQ
Sbjct: 580 GQFCLTYESAMTRLFLEGRTETVRSCTREACNFVRAMEDKEKTDPQCLALFRVAVDKHQA 639
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
L + AM+G+GVDRHLF ++++ +FL+++S FL + SE W+LSTSQ P+ Q D+ Y
Sbjct: 640 LLKAAMSGQGVDRHLFALYIVSRFLHLQSPFLTQVHSEQWQLSTSQIPVQQMHLFDVHNY 699
Query: 687 PDFISA 704
PD++S+
Sbjct: 700 PDYVSS 705
>sp|Q8BGD5|CPT1C_MOUSE Carnitine O-palmitoyltransferase I, mitochondrial brain isoform
(Carnitine palmitoyltransferase 1C) (CPT IC)
Length = 798
Score = 125 bits (314), Expect = 1e-28
Identities = 58/126 (46%), Positives = 89/126 (70%)
Frame = +3
Query: 327 GKFCQTYESSMTRLFRDGRTETVRSCSAEVSEAILSIEDKNIPNTTKILHFRKAAEHHQK 506
G+FC TYES+MTRLF +GRTETVRSC+ E + + ++++K L FR A + HQ
Sbjct: 579 GQFCLTYESAMTRLFLEGRTETVRSCTREACQFVRAMDNKETDQHCLAL-FRVAVDKHQA 637
Query: 507 LYREAMTGKGVDRHLFCMFVICKFLNIKSEFLEKALSEPWKLSTSQTPLGQTKQLDLTRY 686
L + AM+G+G+DRHLF ++++ + L+++S FL + S+ W LSTSQ P+ QT +D+ Y
Sbjct: 638 LLKAAMSGQGIDRHLFALYIMSRLLHMQSPFLTQVQSQQWLLSTSQVPVQQTHLIDVHNY 697
Query: 687 PDFISA 704
PD++S+
Sbjct: 698 PDYVSS 703
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,912,766
Number of Sequences: 369166
Number of extensions: 1279945
Number of successful extensions: 2995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2983
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)