Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_D10
(218 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 92 3e-19
sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 82 4e-16
sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 82 4e-16
sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 82 4e-16
sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 82 4e-16
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 56 2e-08
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 54 1e-07
sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 36 0.031
sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein ... 36 0.031
sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein ... 36 0.031
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33
Length = 308
Score = 92.4 bits (228), Expect = 3e-19
Identities = 39/71 (54%), Positives = 59/71 (83%)
Frame = +1
Query: 4 NFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDPKYQHLNERMHLQ 183
NF GK++GPGG T+K+LQ++T T++S+LG GSMR+++KE EL +GD KY HLNE++H++
Sbjct: 89 NFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHIE 148
Query: 184 VDCLALPSEAH 216
+ +A P+EAH
Sbjct: 149 IISIASPAEAH 159
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 82.0 bits (201), Expect = 4e-16
Identities = 38/71 (53%), Positives = 52/71 (73%)
Frame = +1
Query: 4 NFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDPKYQHLNERMHLQ 183
NF GKI+GP G T+K LQE+T ++SVLG GSMR+++KE EL + GDPKY HLN +H+
Sbjct: 171 NFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVF 230
Query: 184 VDCLALPSEAH 216
++ P EA+
Sbjct: 231 IEVFGPPCEAY 241
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 82.0 bits (201), Expect = 4e-16
Identities = 38/71 (53%), Positives = 52/71 (73%)
Frame = +1
Query: 4 NFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDPKYQHLNERMHLQ 183
NF GKI+GP G T+K LQE+T ++SVLG GSMR+++KE EL + GDPKY HLN +H+
Sbjct: 171 NFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVF 230
Query: 184 VDCLALPSEAH 216
++ P EA+
Sbjct: 231 IEVFGPPCEAY 241
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 82.0 bits (201), Expect = 4e-16
Identities = 38/71 (53%), Positives = 52/71 (73%)
Frame = +1
Query: 4 NFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDPKYQHLNERMHLQ 183
NF GKI+GP G T+K LQE+T ++SVLG GSMR+++KE EL + GDPKY HLN +H+
Sbjct: 171 NFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVF 230
Query: 184 VDCLALPSEAH 216
++ P EA+
Sbjct: 231 IEVFGPPCEAY 241
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated
protein 1 (Src-associated in mitosis 68 kDa protein)
(Sam68)
Length = 433
Score = 82.0 bits (201), Expect = 4e-16
Identities = 38/71 (53%), Positives = 52/71 (73%)
Frame = +1
Query: 4 NFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDPKYQHLNERMHLQ 183
NF GKI+GP G T+K LQE+T ++SVLG GSMR+++KE EL + GDPKY HLN +H+
Sbjct: 154 NFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVF 213
Query: 184 VDCLALPSEAH 216
++ P EA+
Sbjct: 214 IEVFGPPCEAY 224
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 56.2 bits (134), Expect = 2e-08
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +1
Query: 4 NFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDPKYQHLNERMHLQ 183
NF G+I+GP G T K+L++ T ++ V G GSMR++SKE G ++HL + +H+
Sbjct: 220 NFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKES--AHRGKANWEHLEDDLHVL 277
Query: 184 VDCLALPSEAH 216
V C + H
Sbjct: 278 VQCEDTENRVH 288
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/61 (39%), Positives = 41/61 (67%)
Frame = +1
Query: 4 NFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDPKYQHLNERMHLQ 183
NF G+I+GP G T K+L+++T ++ V G GSMR++ KE G P ++HL++ +H+
Sbjct: 152 NFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKED--ANRGKPNWEHLSDDLHVL 209
Query: 184 V 186
+
Sbjct: 210 I 210
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch
point binding protein mBBP) (BBP)
Length = 639
Score = 35.8 bits (81), Expect = 0.031
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 1 VNFPGKIIGPGGKTLKELQEQTETRMSVLGAGSMR 105
+NF G +IGP G TLK ++++ ++ + G GS++
Sbjct: 150 INFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVK 184
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 (FUSE-binding protein 1)
(FBP)
Length = 651
Score = 35.8 bits (81), Expect = 0.031
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 13 GKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDP-KYQHLNE 168
G +IG GG+T+K+LQE+ +M ++ G +N + L TGDP K Q E
Sbjct: 194 GLVIGKGGETIKQLQERAGVKMVMIQDGP-QNTGADKPLRITGDPYKVQQAKE 245
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 (FUSE-binding protein 1)
(FBP) (DNA helicase V) (HDH V)
Length = 643
Score = 35.8 bits (81), Expect = 0.031
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 13 GKIIGPGGKTLKELQEQTETRMSVLGAGSMRNQSKEMELIQTGDP-KYQHLNE 168
G +IG GG+T+K+LQE+ +M ++ G +N + L TGDP K Q E
Sbjct: 197 GLVIGKGGETIKQLQERAGVKMVMIQDGP-QNTGADKPLRITGDPYKVQQAKE 248
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,744,532
Number of Sequences: 369166
Number of extensions: 363732
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)