Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_D08
(354 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 88 5e-18
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 88 5e-18
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 88 5e-18
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 87 1e-17
sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1) 86 2e-17
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 86 3e-17
sp|P16627|HS70L_MOUSE Heat shock 70 kDa protein 1L (Heat sh... 86 3e-17
sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (... 84 8e-17
sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein 84 8e-17
sp|P14659|HSP72_RAT Heat shock-related 70 kDa protein 2 (He... 84 8e-17
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 88.2 bits (217), Expect = 5e-18
Identities = 42/90 (46%), Positives = 54/90 (60%)
Frame = +2
Query: 2 KLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXX 181
KL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGG 616
Query: 182 XXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 617 MPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 88.2 bits (217), Expect = 5e-18
Identities = 42/90 (46%), Positives = 54/90 (60%)
Frame = +2
Query: 2 KLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXX 181
KL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGG 616
Query: 182 XXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 617 MPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 88.2 bits (217), Expect = 5e-18
Identities = 42/90 (46%), Positives = 54/90 (60%)
Frame = +2
Query: 2 KLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXX 181
KL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGG 616
Query: 182 XXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 617 MPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 87.0 bits (214), Expect = 1e-17
Identities = 44/93 (47%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Frame = +2
Query: 2 KLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ---X 172
KLK KIS+ D++ I+DKC E IGWLDKNQ A ++EF++ KELEKVCNPI+TK+YQ
Sbjct: 557 KLKGKISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVCNPIITKLYQSAGG 616
Query: 173 XXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 617 MPGGMPEGMPGGFPGAGAAPGGGSSGPTIEEVD 649
>sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1)
Length = 639
Score = 86.3 bits (212), Expect = 2e-17
Identities = 44/89 (49%), Positives = 53/89 (59%)
Frame = +2
Query: 5 LKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXX 184
LKDKIS+ DRK +V+KC E I WL+ NQ A KDEF + KELEKVCNPI++K+YQ
Sbjct: 560 LKDKISQEDRKRVVEKCDETIAWLENNQLADKDEFQHKQKELEKVCNPIISKLYQ----- 614
Query: 185 XXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
QGPT+EEVD
Sbjct: 615 ----GGMPSGSCREQARADSQGPTIEEVD 639
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 85.5 bits (210), Expect = 3e-17
Identities = 43/95 (45%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Frame = +2
Query: 2 KLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ---- 169
KL+ KIS+ D+ I++KC E IGWLDKNQ A K+E+++H KELEKVCNPI+TK+YQ
Sbjct: 557 KLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQGAGG 616
Query: 170 -XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 617 MPGGMPEGMAGGFPGAGGAAPGGGGSSGPTIEEVD 651
>sp|P16627|HS70L_MOUSE Heat shock 70 kDa protein 1L (Heat shock 70 kDa protein 1-like)
(Heat shock 70 kDa-like protein 1) (Spermatid-specific
heat shock protein 70)
Length = 641
Score = 85.5 bits (210), Expect = 3e-17
Identities = 44/89 (49%), Positives = 53/89 (59%)
Frame = +2
Query: 5 LKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXX 184
LKDKISESD+K I+DKC E + WL+ NQ A KDEFD+ KELE +CNPI+TK+YQ
Sbjct: 560 LKDKISESDKKKILDKCNEVLSWLEANQLAEKDEFDHKRKELENMCNPIITKLYQ----- 614
Query: 185 XXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 615 --SGCTGPTCTPGYTPGRAATGPTIEEVD 641
>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
Length = 639
Score = 84.3 bits (207), Expect = 8e-17
Identities = 42/90 (46%), Positives = 54/90 (60%)
Frame = +2
Query: 2 KLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXX 181
KL+ KISE D+ I+DKCQE I WLD+NQ A KDE+++ KELE+VCNPI++K+YQ
Sbjct: 560 KLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ---- 615
Query: 182 XXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 616 ------GGPGGGSGGGGSGASGGPTIEEVD 639
>sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein
Length = 644
Score = 84.3 bits (207), Expect = 8e-17
Identities = 44/90 (48%), Positives = 52/90 (57%)
Frame = +2
Query: 2 KLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXX 181
KLKDKISE D+K I +KC E + WLD NQ A KDEF++ KELE VCNPI+TK+YQ
Sbjct: 556 KLKDKISEEDKKKIQEKCDETVRWLDGNQTAEKDEFEHRQKELESVCNPIITKLYQSAGG 615
Query: 182 XXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 616 MPGGMPGGMPGGAPGAGSTG-GGPTIEEVD 644
>sp|P14659|HSP72_RAT Heat shock-related 70 kDa protein 2 (Heat shock protein 70.2)
(Testis-specific heat shock protein-related) (HST)
Length = 633
Score = 84.3 bits (207), Expect = 8e-17
Identities = 42/90 (46%), Positives = 54/90 (60%)
Frame = +2
Query: 2 KLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXX 181
KL+ KISE D+ I+DKCQE I WLD+NQ A KDE+++ KELE+VCNPI++K+YQ
Sbjct: 560 KLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ---- 615
Query: 182 XXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 271
GPT+EEVD
Sbjct: 616 ------------GGPGGGGSSGGPTIEEVD 633
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,285,857
Number of Sequences: 369166
Number of extensions: 289216
Number of successful extensions: 1074
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)