Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_D05
(618 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57647|PIT_BUCAI Low-affinity inorganic phosphate transp... 33 0.59
sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprote... 31 2.2
sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprote... 31 2.2
sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprote... 30 5.0
sp|Q95P08|HCYA_SCUCO Hemocyanin subunit A precursor 29 8.5
sp|Q8D2A8|LNT_WIGBR Apolipoprotein N-acyltransferase (ALP N... 29 8.5
>sp|P57647|PIT_BUCAI Low-affinity inorganic phosphate transporter
Length = 490
Score = 33.1 bits (74), Expect = 0.59
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Frame = -1
Query: 504 WTTLKNIKYNKVLLKIINKYNYN*VKSKFQKR----CISN 397
+ ++KNIK K+LLK I+ YN +K +FQ R CIS+
Sbjct: 301 YNSIKNIKNTKLLLKNISNYNDLSIKKRFQLRHYLLCISD 340
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F (hnRNP F) (Nucleolin-like
protein mcs94-1)
Length = 415
Score = 31.2 bits (69), Expect = 2.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 52 GAAEGEVDAEFANEDEAYNAMSKNRERL 135
G GE D EFA +EA AMSK+R +
Sbjct: 325 GRVTGEADVEFATHEEAVAAMSKDRANM 352
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
Length = 415
Score = 31.2 bits (69), Expect = 2.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 52 GAAEGEVDAEFANEDEAYNAMSKNRERL 135
G GE D EFA +EA AMSK+R +
Sbjct: 325 GRVTGEADVEFATHEEAVAAMSKDRANM 352
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) (hnRNP 2H9)
Length = 346
Score = 30.0 bits (66), Expect = 5.0
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 52 GAAEGEVDAEFANEDEAYNAMSKNRERLG 138
G + GE +FA+++ A NA+ K++ER+G
Sbjct: 54 GRSTGEAFVQFASKEIAENALGKHKERIG 82
>sp|Q95P08|HCYA_SCUCO Hemocyanin subunit A precursor
Length = 656
Score = 29.3 bits (64), Expect = 8.5
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Frame = -3
Query: 367 NQIITKLDLQKLSRS-PKLRP----GPPI-----PRL-ISLSLRSYSGIPSGLLYPNSSL 221
+Q++ + D ++LS + P+ P P+ P L I + +Y P GL+ +
Sbjct: 228 HQMVARYDSERLSNNLPRTEPFENWDDPLEEGYAPHLTIHKTGYNYMFRPEGLIVRDLPE 287
Query: 220 LNKNKHRFYKSTIIH 176
LNKNK R +KS I+H
Sbjct: 288 LNKNKMRQWKSRILH 302
>sp|Q8D2A8|LNT_WIGBR Apolipoprotein N-acyltransferase (ALP N-acyltransferase)
Length = 499
Score = 29.3 bits (64), Expect = 8.5
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = -3
Query: 382 SKIWVNQIITKLDLQKLSRSPKLRPGPPIPRLISLSLRSY--SGIPSGLLYPNSSLLNKN 209
S I ++I + L K+ + KL+ I +ISL +Y S I G NS L+ +
Sbjct: 258 SAIPCDEISCRNFLLKIDKELKLKKSYLITGIISLKKSNYYNSIITLG---GNSPYLDNS 314
Query: 208 KHRFYKSTIIHVLSVLPIKTL 146
K+++YK ++ LP+K++
Sbjct: 315 KNKYYKYNLVPFGEKLPLKSI 335
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,396,029
Number of Sequences: 369166
Number of extensions: 1050067
Number of successful extensions: 2676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2676
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)