Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_D02
(749 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-... 180 3e-45
sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-... 180 4e-45
sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-... 179 9e-45
sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-... 178 2e-44
sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-... 177 4e-44
sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-... 177 4e-44
sp|Q69BK2|UCRI_THEGE Ubiquinol-cytochrome c reductase iron-... 177 4e-44
sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-... 176 5e-44
sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-... 176 6e-44
sp|Q69BK3|UCRI_PONPY Ubiquinol-cytochrome c reductase iron-... 176 8e-44
>sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) [Contains:
Ubiquinol-cytochrome c reductase 8 kDa protein (Complex
III subunit IX)]
Length = 274
Score = 180 bits (457), Expect = 3e-45
Identities = 94/202 (46%), Positives = 128/202 (63%), Gaps = 1/202 (0%)
Frame = +1
Query: 145 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 321
E +LD +S+L + + P SVSLN P VR HT+ KVP+F +YRR E+
Sbjct: 39 ESPVLDLKRSVLCRESLRGQAAGRPLVASVSLNVPASVRYSHTDI-KVPDFSDYRRPEVL 97
Query: 322 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 501
ST + + R+ SY +++V+ +SSM +A L+ + IE+ LS
Sbjct: 98 DSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLS 157
Query: 502 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 681
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D ERV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVC 217
Query: 682 THLGCVPISNAGEYNGYYCPCH 747
THLGCVPI+NAG++ GYYCPCH
Sbjct: 218 THLGCVPIANAGDFGGYYCPCH 239
>sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 180 bits (456), Expect = 4e-45
Identities = 92/202 (45%), Positives = 123/202 (60%), Gaps = 1/202 (0%)
Frame = +1
Query: 145 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 321
E +LD + +L + P SV LN P VR HT+ KVP+F +YRR E+
Sbjct: 39 EPPVLDPKRPILSRESLSGQAARRPLVASVGLNVPASVRYSHTDI-KVPDFSDYRRSEVL 97
Query: 322 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 501
T R + R+ SY + +VT +SSM +A L+ + IE+ LS
Sbjct: 98 DKTKSSRESSDARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLS 157
Query: 502 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 681
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVC 217
Query: 682 THLGCVPISNAGEYNGYYCPCH 747
THLGCVPI+NAG++ GYYCPCH
Sbjct: 218 THLGCVPIANAGDFGGYYCPCH 239
>sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 179 bits (453), Expect = 9e-45
Identities = 92/202 (45%), Positives = 123/202 (60%), Gaps = 1/202 (0%)
Frame = +1
Query: 145 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 321
E +LD + +L + P SV LN P VR HT+ KVP+F +YRR E+
Sbjct: 39 EPPVLDPKRPILSRESLSGQAARRPLVASVGLNVPASVRYSHTDI-KVPDFSDYRRSEVL 97
Query: 322 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 501
T R + R+ SY + +VT +SSM +A L+ + IE+ LS
Sbjct: 98 DKTKSSRESSDARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLS 157
Query: 502 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 681
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVC 217
Query: 682 THLGCVPISNAGEYNGYYCPCH 747
THLGCVPI+NAG++ GYYCPCH
Sbjct: 218 THLGCVPIANAGDFGGYYCPCH 239
>sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 178 bits (451), Expect = 2e-44
Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 1/204 (0%)
Frame = +1
Query: 139 PKEKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREE 315
PK I+ S+ L G+ +R P +V LN P VR HT+ KVP+F +YRR E
Sbjct: 45 PKRPIL---SRESLSGQAARR-----PLVATVGLNVPASVRYSHTDI-KVPDFSDYRRSE 95
Query: 316 LKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVD 495
+ +T R + R+ SY + +VT +SSM +A L+ + IE+
Sbjct: 96 VLDTTKSSRESSDARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIK 155
Query: 496 LSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIG 675
LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG
Sbjct: 156 LSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIG 215
Query: 676 ICTHLGCVPISNAGEYNGYYCPCH 747
+CTHLGCVPI+NAG++ GYYCPCH
Sbjct: 216 VCTHLGCVPIANAGDFGGYYCPCH 239
>sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 177 bits (448), Expect = 4e-44
Identities = 94/195 (48%), Positives = 122/195 (62%), Gaps = 1/195 (0%)
Frame = +1
Query: 166 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 342
S+ L G+ +R P SV LN P V HT+ KVP+F +YRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFCDYRRPEVLDSTKSSR 104
Query: 343 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 522
+ R+ SY ++ VT +SSM +A L+ A IEV LS IPEGK+
Sbjct: 105 ESSEARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKN 164
Query: 523 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 702
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 703 ISNAGEYNGYYCPCH 747
I+NAG++ GYYCPCH
Sbjct: 225 IANAGDFGGYYCPCH 239
>sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 177 bits (448), Expect = 4e-44
Identities = 93/195 (47%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Frame = +1
Query: 166 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 342
S+ L G+ +R P SV LN P V HT+ KVP+F +YRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFYDYRRLEVLDSTKSSR 104
Query: 343 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 522
+ R+ SY +++VT +SSM +A L+ A IE++LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKN 164
Query: 523 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 702
+ KWR KPLFVRHRT ++I E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 703 ISNAGEYNGYYCPCH 747
I+NAG++ GYYCPCH
Sbjct: 225 IANAGDFGGYYCPCH 239
>sp|Q69BK2|UCRI_THEGE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 177 bits (448), Expect = 4e-44
Identities = 94/195 (48%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Frame = +1
Query: 166 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 342
S+ L G+ +R P SV LN P V HT+ KVP+F +YRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFYDYRRLEVLDSTKSSR 104
Query: 343 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 522
+ R+ SY ++ VT +SSM +A L+ A IE++LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASADVLAMAKIEINLSDIPEGKN 164
Query: 523 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 702
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIGICTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTHLGCVP 224
Query: 703 ISNAGEYNGYYCPCH 747
I+NAG++ GYYCPCH
Sbjct: 225 IANAGDFGGYYCPCH 239
>sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|P47985|UCRI_HUMAN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 176 bits (447), Expect = 5e-44
Identities = 94/195 (48%), Positives = 122/195 (62%), Gaps = 1/195 (0%)
Frame = +1
Query: 166 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 342
S+ L G+ +R P SV LN P V HT+ KVP+F EYRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDI-KVPDFSEYRRLEVLDSTKSSR 104
Query: 343 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 522
+ R+ SY ++ VT +SSM +A L+ A IE+ LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKN 164
Query: 523 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 702
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 703 ISNAGEYNGYYCPCH 747
I+NAG++ GYYCPCH
Sbjct: 225 IANAGDFGGYYCPCH 239
>sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|Q69BK6|UCRI_PANPA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 176 bits (446), Expect = 6e-44
Identities = 94/195 (48%), Positives = 122/195 (62%), Gaps = 1/195 (0%)
Frame = +1
Query: 166 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 342
S+ L G+ +R P SV LN P V HT+ KVP+F EYRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFSEYRRLEVLDSTKSSR 104
Query: 343 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 522
+ R+ SY ++ VT +SSM +A L+ A IE+ LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKN 164
Query: 523 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 702
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 703 ISNAGEYNGYYCPCH 747
I+NAG++ GYYCPCH
Sbjct: 225 IANAGDFGGYYCPCH 239
>sp|Q69BK3|UCRI_PONPY Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 176 bits (445), Expect = 8e-44
Identities = 93/195 (47%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Frame = +1
Query: 166 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 342
S+ L G+ +R P SV LN P V HT+ +VP+F EYRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-RVPDFSEYRRLEVLDSTKSSR 104
Query: 343 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 522
+ R+ SY +++VT +SSM +A L+ A IE+ LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTGVTTVGVAYAAKNVVTQFVSSMSASADVLALAKIEIKLSDIPEGKN 164
Query: 523 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 702
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 703 ISNAGEYNGYYCPCH 747
I+NAG++ GYYCPCH
Sbjct: 225 IANAGDFGGYYCPCH 239
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,865,953
Number of Sequences: 369166
Number of extensions: 1623685
Number of successful extensions: 3843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3825
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)