Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_C19
(530 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8RGH4|HTPG_FUSNN Chaperone protein htpG (Heat shock pro... 32 1.3
sp|Q04704|V6B_CVCAE Protein 6B 31 1.6
sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein al... 31 1.6
sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Solu... 30 2.8
sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 29 6.2
sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase... 29 6.2
sp|Q01352|VU5_HHV6U U5 protein 29 8.1
sp|Q9ZZT7|CYB_ELIQU Cytochrome b 29 8.1
sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chai... 29 8.1
>sp|Q8RGH4|HTPG_FUSNN Chaperone protein htpG (Heat shock protein htpG) (High temperature
protein G)
Length = 607
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 198 YSHY-EYQIFVGTEIQNSTKLVWKWTDGKNLPEN 296
YS+Y Y+I+ G E+ NSTK +WK D K L ++
Sbjct: 199 YSNYIRYEIYFGDEVINSTKPIWK-KDKKELKDD 231
>sp|Q04704|V6B_CVCAE Protein 6B
Length = 213
Score = 31.2 bits (69), Expect = 1.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 129 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVGTEIQNST-KLVWKWTDGKNLPENAIM 305
G+ + IEG C++ GYK AY+H +Y + + + K D + ++
Sbjct: 62 GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121
Query: 306 GGHDGDKMLFIG 341
G DK L +G
Sbjct: 122 GATPKDKRLTVG 133
>sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein alpha chain (Nitrogenase
component I) (Dinitrogenase)
Length = 534
Score = 31.2 bits (69), Expect = 1.6
Identities = 24/95 (25%), Positives = 40/95 (42%)
Frame = +3
Query: 132 SRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVGTEIQNSTKLVWKWTDGKNLPENAIMGG 311
+R V II CAY G KGV + + + + W K+ PEN G
Sbjct: 41 TRTVPGIITARGCAYAGCKGVVMGPIKDMVHITHGPIGCSFYTWGGRRFKSKPENGT--G 98
Query: 312 HDGDKMLFIGRACVDNQILVGSYNKDKGTVYVPYK 416
+ ++ +F ++ I+ G NK K ++ Y+
Sbjct: 99 LNFNEYVF-STDMQESDIVFGGVNKLKDAIHEAYE 132
>sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Soluble cell wall protein 3)
Length = 420
Score = 30.4 bits (67), Expect = 2.8
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Frame = +3
Query: 12 IVKDQTDNQTKWERHENGNIPCGAVYAGGRCYIVRVMHEG---------SRLVGSIIEGE 164
I D D +E+ E+G IPCG +G + + EG + GS EG
Sbjct: 149 IYGDLADFSGPYEKFEDGTIPCGQFPSGQGVIPISWLDEGGWSGVENTDTSTGGSCKEGS 208
Query: 165 NCAYCGYKGVAYSHY 209
C+Y G++ + +
Sbjct: 209 YCSYACQPGMSKTQW 223
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
Length = 479
Score = 29.3 bits (64), Expect = 6.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 159 GENCAYCGYKGVAYSHYEYQIFVGTEIQNSTKLVWKWTDG 278
GE+ YCG K + +H +Y + + L W DG
Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDG 107
>sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 (Ubiquitin thiolesterase
24) (Ubiquitin-specific processing protease 24)
(Deubiquitinating enzyme 24)
Length = 977
Score = 29.3 bits (64), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 125 MHHSNYIASSTCIHCTTWNISILMTFP 45
MHHSN++ SS C C + +++ P
Sbjct: 842 MHHSNHVDSSRCYQCVKFLVTLAQKCP 868
>sp|Q01352|VU5_HHV6U U5 protein
Length = 444
Score = 28.9 bits (63), Expect = 8.1
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 522 LNSKSDHIFKLFCLNTLIKHQRCIKYHSLLLRILCLCMEHKRFLYLYCKIQLKFDCQH 349
L +KSD F+ + + C+ H +LL C C+E +R +Y K KFD H
Sbjct: 90 LENKSDVFFRYDFFERI---ESCLIEHFMLL---CGCVECRRMFIMYNKRGRKFDFGH 141
>sp|Q9ZZT7|CYB_ELIQU Cytochrome b
Length = 379
Score = 28.9 bits (63), Expect = 8.1
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -1
Query: 254 FSAVLNFC---SYENLIFIMRISNSFIAAICTIFSFYN*SNKSRTFMHHSNYIASSTCIH 84
FS+V + C +Y LI M + + + IC F+H I +C+
Sbjct: 63 FSSVTHICRDVNYGWLIRYMHANGASMFFICL-------------FLHVGRGIYYGSCLF 109
Query: 83 CTTWNISILMTF 48
TWNI I++ F
Sbjct: 110 TETWNIGIILLF 121
>sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit)
Length = 347
Score = 28.9 bits (63), Expect = 8.1
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 96 GRCYIVRVMHEG-SRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVGTEIQNSTKLVWK-W 269
G+ Y+ MHEG S +G I + ++ + VAY+ + ++ ++ N KL+ + W
Sbjct: 160 GKGYVPADMHEGLSEEIGLI--KLDASFSPVRKVAYTVEQARV---GQMTNYDKLILEVW 214
Query: 270 TDGKNLPENAI 302
TDG PE+AI
Sbjct: 215 TDGSVSPEDAI 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,971,717
Number of Sequences: 369166
Number of extensions: 1382747
Number of successful extensions: 3979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3972
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)