Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_C12
(381 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R157|ADA18_MOUSE ADAM 18 precursor (A disintegrin and ... 36 0.024
sp|Q8CG18|LTB1S_MOUSE Latent transforming growth factor bet... 36 0.024
sp|Q8CG19|LTB1L_MOUSE Latent transforming growth factor bet... 36 0.024
sp|P97776|ADA18_RAT ADAM 18 (A disintegrin and metalloprote... 36 0.031
sp|Q09279|YQI6_CAEEL Hypothetical protein C45G9.6 in chromo... 35 0.041
sp|P10969|AGI3_WHEAT Agglutinin isolectin 3 precursor (WGA3) 34 0.091
sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor bet... 34 0.12
sp|P02876|AGI2_WHEAT Agglutinin isolectin 2 precursor (WGA2... 33 0.20
sp|O88322|NID2_MOUSE Nidogen-2 precursor (NID-2) (Entactin-2) 33 0.20
sp|Q96GP6|SREC2_HUMAN Scavenger receptor class F member 2 p... 33 0.26
>sp|Q9R157|ADA18_MOUSE ADAM 18 precursor (A disintegrin and metalloproteinase domain 18)
(Transmembrane metalloproteinase-like, disintegrin-like,
and cysteine-rich protein III) (tMDC III) (ADAM 27)
Length = 719
Score = 36.2 bits (82), Expect = 0.024
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Frame = +1
Query: 25 CIPIKPNSEMKFCAKDSLLAGFVGSGGICNEDKQCHSGYCVQVAGTTKHC--SKDSRRQG 198
C+ + P M+ +DS +V G +C C +G C +V T C +K + G
Sbjct: 574 CLSVLPGLSMRSDGRDS---AYVADGTVCGPQMYCINGTCKEVNFTGNDCNATKKCKGNG 630
Query: 199 LIGQGGPCLKDSQCFSGVCFKYRGQNVCARESKKPGLVGSGGRCKKNEQCFS 354
+ G C QCF YR + C + PG G + E F+
Sbjct: 631 ICNNFGNC----QCFP----DYRPPD-CNLQIGSPGGSIDDGNTLRTESAFA 673
>sp|Q8CG18|LTB1S_MOUSE Latent transforming growth factor beta binding protein, isoform 1S
precursor (LTBP-1) (Transforming growth factor beta-1
binding protein 1) (TGF-beta1-BP-1)
Length = 1389
Score = 36.2 bits (82), Expect = 0.024
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Frame = +1
Query: 127 CHSGYCVQVAGTTKHCS--KDSRRQGLIGQGGPCLKDSQCFSGVC---FKYRGQNVCA-- 285
C+ GY V G HC + + QGG C+ + + C F+ C
Sbjct: 815 CNQGYRASVLGD--HCEDINECLEDSSVCQGGDCINTAGSYDCTCPDGFQLNDNKGCQDI 872
Query: 286 RESKKPGLVGSGGRCKKNEQCFSNYC 363
E +PGL GS G C + F C
Sbjct: 873 NECAQPGLCGSHGECLNTQGSFHCVC 898
>sp|Q8CG19|LTB1L_MOUSE Latent transforming growth factor beta binding protein, isoform 1L
precursor (LTBP-1) (Transforming growth factor beta-1
binding protein 1) (TGF-beta1-BP-1)
Length = 1713
Score = 36.2 bits (82), Expect = 0.024
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Frame = +1
Query: 127 CHSGYCVQVAGTTKHCS--KDSRRQGLIGQGGPCLKDSQCFSGVC---FKYRGQNVCA-- 285
C+ GY V G HC + + QGG C+ + + C F+ C
Sbjct: 1139 CNQGYRASVLGD--HCEDINECLEDSSVCQGGDCINTAGSYDCTCPDGFQLNDNKGCQDI 1196
Query: 286 RESKKPGLVGSGGRCKKNEQCFSNYC 363
E +PGL GS G C + F C
Sbjct: 1197 NECAQPGLCGSHGECLNTQGSFHCVC 1222
>sp|P97776|ADA18_RAT ADAM 18 (A disintegrin and metalloproteinase domain 18)
(Transmembrane metalloproteinase-like, disintegrin-like,
and cysteine-rich protein III) (tMDC III)
Length = 445
Score = 35.8 bits (81), Expect = 0.031
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 25 CIPIKPNSEMKFCAKDSLLAGFVGSGGICNEDKQCHSGYCVQVAGTTKHC--SKDSRRQG 198
C+ I P M+ KD+ +V G +C C +G C +V T C +K + G
Sbjct: 300 CLSIPPGLSMRSDGKDN---AYVADGTVCGPQMYCINGSCKEVNFTGNDCNAAKKCKGNG 356
Query: 199 LIGQGGPCLKDSQCF 243
+ G C QCF
Sbjct: 357 ICNNFGHC----QCF 367
>sp|Q09279|YQI6_CAEEL Hypothetical protein C45G9.6 in chromosome III
Length = 542
Score = 35.4 bits (80), Expect = 0.041
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Frame = +1
Query: 100 GGICNEDKQCHSG-YCVQVAGTTKHC---SKDSRRQGLIGQGGPCLKDSQC-FSGVCFKY 264
GG CN + C SG YC K C S G G C S C + VC
Sbjct: 63 GGYCNSNTDCRSGLYCTASVNGVKICLSTSNGGGGNGFPSGNGGCQTSSNCQYGSVCVVT 122
Query: 265 RGQNVC 282
GQ C
Sbjct: 123 NGQGNC 128
>sp|P10969|AGI3_WHEAT Agglutinin isolectin 3 precursor (WGA3)
Length = 186
Score = 34.3 bits (77), Expect = 0.091
Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 25/146 (17%)
Frame = +1
Query: 1 GYNCFSGYCIPIKPNSEMKFCAKDSLLAGFVGSGGICNEDKQCHS---------GYCVQV 153
G C + C S+ +C G G C K+C S +C
Sbjct: 9 GMECPNNLCC-----SQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQ 63
Query: 154 AGTTKHCSKDSRRQGLIGQGGPCLKDSQCFSGVCFKYRGQNVCARESKKPGL----VGSG 321
G HC + G QGGPC D +C S K N+C + GL G G
Sbjct: 64 YG---HCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEG 120
Query: 322 ---GRCKKNEQ---------CFSNYC 363
G C ++ C +NYC
Sbjct: 121 CQNGACSTDKPCGKDAGGRVCTNNYC 146
>sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor beta binding protein 4 precursor
(LTBP-4)
Length = 1666
Score = 33.9 bits (76), Expect = 0.12
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Frame = +1
Query: 103 GICNEDKQCHSG-------YCVQVAGTTKHCSKDSRRQGLIGQGGPCLKDSQCFS----- 246
G C + +C SG C G+ HCS + + GQ GPC ++C
Sbjct: 873 GRCTDVDECSSGTPCGLHGQCTNTKGSF-HCSCSTGYRAPSGQPGPCADINECLEGDFCF 931
Query: 247 --GVCFKYRGQNVC-ARESKKPGLVGSG----GRCKKNEQCFSNYC 363
G C G C +PG G+ C + + C S C
Sbjct: 932 PHGECLNTDGSFTCTCAPGYRPGPRGASCLDVDECSEEDLCQSGIC 977
Score = 29.3 bits (64), Expect = 2.9
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = +1
Query: 115 EDKQCHSGYCVQVA-GTTKHCSK----DSRRQGLIGQGGPCLKDSQCFSGVCFKYRGQNV 279
+D+ C SG CV A G + +CS + R + ++ C G C G
Sbjct: 1303 QDQVCKSGVCVNTAPGYSCYCSNGFYYHAHRLECVDNDECADEEPACEGGRCVNTVGSYH 1362
Query: 280 CARESKKPGLV--GSGGRCKKNEQCFSNYCVEDKIG 381
C E P LV GS RC NE + ++D +G
Sbjct: 1363 CTCE---PPLVLDGSRRRCVSNE----SQSLDDNLG 1391
>sp|P02876|AGI2_WHEAT Agglutinin isolectin 2 precursor (WGA2) (Isolectin D)
Length = 213
Score = 33.1 bits (74), Expect = 0.20
Identities = 35/125 (28%), Positives = 44/125 (35%), Gaps = 13/125 (10%)
Frame = +1
Query: 46 SEMKFCAKDSLLAGFVGSGGICNEDKQCHSGYCVQVAGTT----------KHCSKDSRRQ 195
S+ +C G G C K+C S Q G T HC +
Sbjct: 46 SQYGYCGMGGDYCGKGCQNGACWTSKRCGS----QAGGATCPNNHCCSQYGHCGFGAEYC 101
Query: 196 GLIGQGGPCLKDSQCFSGVCFKYRGQNVCARESKKPGLVGS---GGRCKKNEQCFSNYCV 366
G QGGPC D +C S K N+C + GL GS GG C+ C
Sbjct: 102 GAGCQGGPCRADIKCGSQSGGKLCPNNLCCSQWGFCGL-GSEFCGGGCQSGACSTDKPCG 160
Query: 367 EDKIG 381
+D G
Sbjct: 161 KDAGG 165
>sp|O88322|NID2_MOUSE Nidogen-2 precursor (NID-2) (Entactin-2)
Length = 1403
Score = 33.1 bits (74), Expect = 0.20
Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 8/114 (7%)
Frame = +1
Query: 61 CAKDSLLAGFVGSGGICNEDKQCHSGY--------CVQVAGTTKHCSKDSRRQGLIGQGG 216
C +S+ VGS +C SGY C+ +A C S GQ
Sbjct: 835 CGPNSVCVNLVGSYRC-----ECRSGYEFADDQHTCILIAPPPNPCFDGSHTCAPEGQAR 889
Query: 217 PCLKDSQCFSGVCFKYRGQNVCARESKKPGLVGSGGRCKKNEQCFSNYCVEDKI 378
FS C PG +G+G +C ++C N C E I
Sbjct: 890 CIHHGGSSFSCACL--------------PGFIGTGHQCSDVDECAENRCHEAAI 929
>sp|Q96GP6|SREC2_HUMAN Scavenger receptor class F member 2 precursor (Scavenger receptor
expressed by endothelial cells 2 protein) (SREC-II)
(SRECRP-1)
Length = 866
Score = 32.7 bits (73), Expect = 0.26
Identities = 28/96 (29%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Frame = +1
Query: 100 GGICNEDKQCHSGYCVQVAGTTKHCSKDSRRQGLIGQGGPCLKDSQCFSGVCFKYRGQNV 279
G CN C+S C Q +G C R G C + QCF G C G
Sbjct: 208 GRSCNNQCACNSSPCEQQSG---RCQCRERTFG-----ARCDRYCQCFRGRCHPVDGTCA 259
Query: 280 C--------ARESKKPGLVGSG-----GRCKKNEQC 348
C RE G G G G+CK + C
Sbjct: 260 CEPGYRGKYCREPCPAGFYGLGCRRRCGQCKGQQPC 295
Score = 28.1 bits (61), Expect = 6.5
Identities = 26/110 (23%), Positives = 33/110 (30%), Gaps = 22/110 (20%)
Frame = +1
Query: 100 GGICNEDKQCHSGYCVQVAGTTK--------------HCSKDSRRQGLIGQ--------G 213
G C QC G C +G + +CS SR G G
Sbjct: 149 GARCEHACQCQHGTCHPRSGACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHAGWWG 208
Query: 214 GPCLKDSQCFSGVCFKYRGQNVCARESKKPGLVGSGGRCKKNEQCFSNYC 363
C C S C + G+ C + G RC + QCF C
Sbjct: 209 RSCNNQCACNSSPCEQQSGRCQCRERT-------FGARCDRYCQCFRGRC 251
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,953,110
Number of Sequences: 369166
Number of extensions: 1024049
Number of successful extensions: 2713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2681
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)