Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_C03
(187 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15845|SM20_SCHMA 20 kDa calcium-binding protein (Antige... 34 0.12
sp|P36953|AFAM_RAT Afamin precursor (Alpha-albumin) (Alpha-... 28 4.9
>sp|P15845|SM20_SCHMA 20 kDa calcium-binding protein (Antigen SM20)
Length = 154
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 2 TGFVDFDEFYKLMTS 46
+GFVDFDEFYKLMTS
Sbjct: 139 SGFVDFDEFYKLMTS 153
>sp|P36953|AFAM_RAT Afamin precursor (Alpha-albumin) (Alpha-Alb)
Length = 608
Score = 28.5 bits (62), Expect = 4.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 159 PYYESLSPASKCGIYSNNQQK*INIY 82
P + +L P KC Y NN + +N+Y
Sbjct: 137 PPFPTLDPEEKCQAYKNNSESFLNLY 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,332,448
Number of Sequences: 369166
Number of extensions: 197761
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)