Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_B17
(819 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z2U0|PSA7_MOUSE Proteasome subunit alpha type 7 (Prote... 305 1e-82
sp|Q9CWH6|PSA7L_MOUSE Proteasome subunit alpha type 7-like 303 3e-82
sp|Q9PTW9|PSA7_CARAU Proteasome subunit alpha type 7 (Prote... 302 6e-82
sp|O14818|PSA7_HUMAN Proteasome subunit alpha type 7 (Prote... 300 2e-81
sp|Q9PVQ1|PSA7B_XENLA Proteasome subunit alpha type 7-B (Pr... 300 4e-81
sp|Q9PVY6|PSA7A_XENLA Proteasome subunit alpha type 7-A (Pr... 300 4e-81
sp|P48004|PSA7_RAT Proteasome subunit alpha type 7 (Proteas... 294 2e-79
sp|Q8TAA3|PSA7L_HUMAN Proteasome subunit alpha type 7-like 289 7e-78
sp|O13268|PSA7_CHICK Proteasome subunit alpha type 7 (GPRO-28) 287 2e-77
sp|P22769|PSA71_DROME Proteasome subunit alpha type 7-1 (Pr... 287 3e-77
>sp|Q9Z2U0|PSA7_MOUSE Proteasome subunit alpha type 7 (Proteasome subunit RC6-1)
Length = 248
Score = 305 bits (780), Expect = 1e-82
Identities = 153/235 (65%), Positives = 189/235 (80%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV VRGKD VVLGVEKK++AKLQDERTV+KI
Sbjct: 4 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKIC 63
Query: 183 LIDGHIAMAFAGLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQKYTQSNG 362
+D ++ MAFAGLTADAR++I+RAR+EC+S++LT E P +VEY+ +IA+LKQ+YTQSNG
Sbjct: 64 ALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNG 123
Query: 363 RRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYSQDVVTN 542
RRPFG+S LIVGFD DGTP LYQTDPSGT+ + AN+IG+ KSV+EFLEK+Y+ D +
Sbjct: 124 RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIET 183
Query: 543 EHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIETYV 707
+ T+KL IKALLE VQS ++++++M D P+K L P EIE YV
Sbjct: 184 DDLTIKLVIKALLEVVQSGGKNIELAVM--RRDQPLK-------ILNPEEIEKYV 229
>sp|Q9CWH6|PSA7L_MOUSE Proteasome subunit alpha type 7-like
Length = 250
Score = 303 bits (777), Expect = 3e-82
Identities = 151/232 (65%), Positives = 189/232 (81%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV +RG + VVLGVEKK++AKLQDERTV+KI
Sbjct: 6 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKIC 65
Query: 183 LIDGHIAMAFAGLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQKYTQSNG 362
+D H+ MAFAGLTADARV+I RAR+EC+S+KLT E P +VEY+ FIA LKQKYTQSNG
Sbjct: 66 ALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNG 125
Query: 363 RRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYSQDVVTN 542
RRPFG+S LIVGFD DG P LYQTDPSGT+ + AN+IG++ K+V+EFLEK+Y++D ++N
Sbjct: 126 RRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISN 185
Query: 543 EHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIE 698
+ + +KLAIKALLE VQS +++++++ D P+K L+ SEIE
Sbjct: 186 DKEAIKLAIKALLEVVQSGGKNIELAII--RRDQPLKMFSAKEIELEVSEIE 235
>sp|Q9PTW9|PSA7_CARAU Proteasome subunit alpha type 7 (Proteasome subunit alpha 4)
Length = 251
Score = 302 bits (774), Expect = 6e-82
Identities = 148/235 (62%), Positives = 191/235 (81%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV +RGKD VVLGVEKK++AKLQ+ERTV+KI
Sbjct: 6 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKIC 65
Query: 183 LIDGHIAMAFAGLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQKYTQSNG 362
+D H+ MAFAGLTADAR++I+RAR+EC+S++LT E P +VEY+ +IA LKQ+YTQSNG
Sbjct: 66 ALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNG 125
Query: 363 RRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYSQDVVTN 542
RRPFG+S LIVGFD DGTP LYQTDPSGT+ + AN+IG++ K+V+EFLEK+Y+ + + +
Sbjct: 126 RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIAS 185
Query: 543 EHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIETYV 707
++D +KLAIKALLE VQS +++++++ N + I L+ EIET V
Sbjct: 186 DNDAIKLAIKALLEVVQSGGKNIELAVIRRNQPLKI---------LESKEIETLV 231
>sp|O14818|PSA7_HUMAN Proteasome subunit alpha type 7 (Proteasome subunit RC6-1)
(Proteasome subunit XAPC7)
Length = 248
Score = 300 bits (769), Expect = 2e-81
Identities = 149/235 (63%), Positives = 188/235 (80%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV VRG+D VVLGVEKK++AKLQDERTV+KI
Sbjct: 4 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKIC 63
Query: 183 LIDGHIAMAFAGLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQKYTQSNG 362
+D ++ MAFAGLTADAR++I+RAR+EC+S++LT E P +VEY+ +IA+LKQ+YTQSNG
Sbjct: 64 ALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNG 123
Query: 363 RRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYSQDVVTN 542
RRPFG+S LIVGFD DGTP LYQTDPSGT+ + AN+IG+ KSV+EFLEK+Y+ + +
Sbjct: 124 RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIET 183
Query: 543 EHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIETYV 707
+ T+KL IKALLE VQS ++++++M R + + L P EIE YV
Sbjct: 184 DDLTIKLVIKALLEVVQSGGKNIELAVM---------RRDQSLKILNPEEIEKYV 229
>sp|Q9PVQ1|PSA7B_XENLA Proteasome subunit alpha type 7-B (Proteasome subunit alpha 4-B)
Length = 247
Score = 300 bits (767), Expect = 4e-81
Identities = 151/235 (64%), Positives = 188/235 (80%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV VRGK+ VVLGVEKK++AKLQDERTV+KI
Sbjct: 4 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKIC 63
Query: 183 LIDGHIAMAFAGLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQKYTQSNG 362
+D ++ MAFAGLTADAR++I+RAR+EC+S++LT E P +VEY+ +IA+LKQ+YTQSNG
Sbjct: 64 ALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNG 123
Query: 363 RRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYSQDVVTN 542
RRPFG+S LIVGFD DGTP LYQTDPSGT+ + AN+IG+ KSV+EFLEK Y+ + +
Sbjct: 124 RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIET 183
Query: 543 EHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIETYV 707
+ T+KL IKALLE VQS ++++++M D P+K L P EIE YV
Sbjct: 184 DDLTIKLVIKALLEVVQSGGKNIELAVM--RRDQPLK-------ILNPEEIERYV 229
>sp|Q9PVY6|PSA7A_XENLA Proteasome subunit alpha type 7-A (Proteasome subunit alpha 4-A)
Length = 248
Score = 300 bits (767), Expect = 4e-81
Identities = 151/235 (64%), Positives = 188/235 (80%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV VRGK+ VVLGVEKK++AKLQDERTV+KI
Sbjct: 4 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKIC 63
Query: 183 LIDGHIAMAFAGLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQKYTQSNG 362
+D ++ MAFAGLTADAR++I+RAR+EC+S++LT E P +VEY+ +IA+LKQ+YTQSNG
Sbjct: 64 ALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNG 123
Query: 363 RRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYSQDVVTN 542
RRPFG+S LIVGFD DGTP LYQTDPSGT+ + AN+IG+ KSV+EFLEK Y+ + +
Sbjct: 124 RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIET 183
Query: 543 EHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIETYV 707
+ T+KL IKALLE VQS ++++++M D P+K L P EIE YV
Sbjct: 184 DDLTIKLVIKALLEVVQSGGKNIELAVM--RRDQPLK-------ILNPEEIERYV 229
>sp|P48004|PSA7_RAT Proteasome subunit alpha type 7 (Proteasome subunit RC6-1)
Length = 254
Score = 294 bits (753), Expect = 2e-79
Identities = 151/241 (62%), Positives = 188/241 (78%), Gaps = 6/241 (2%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV VRG+D VVLGVEKK++AKLQDERTV+KI
Sbjct: 4 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKIC 63
Query: 183 LIDGHIAMAFA------GLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQK 344
+D ++ MAFA GLTADAR++I+RAR+EC+S++LT P +VEY+ +IA+LKQ+
Sbjct: 64 ALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQR 123
Query: 345 YTQSNGRRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYS 524
YTQSNGRRPFG+S LIVGFD DGTP LYQTDPSGT+ + AN+IG+ KSV+EFLEK+Y+
Sbjct: 124 YTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 183
Query: 525 QDVVTNEHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIETY 704
D + + T+KL IKALLE VQS ++++++M D P+K L P EIE Y
Sbjct: 184 DDAIETDDLTIKLVIKALLEVVQSGGKNIELAVM--RRDQPLK-------ILSPEEIEKY 234
Query: 705 V 707
V
Sbjct: 235 V 235
>sp|Q8TAA3|PSA7L_HUMAN Proteasome subunit alpha type 7-like
Length = 256
Score = 289 bits (739), Expect = 7e-78
Identities = 148/238 (62%), Positives = 187/238 (78%), Gaps = 6/238 (2%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV +RG + VVLGVEKK++AKLQDERTV+KI
Sbjct: 6 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKIC 65
Query: 183 LIDGHIAMAFA------GLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQK 344
+D H+ MAFA GLTADARV+I+RAR+EC+S+KLT E P +VEY+ FIA LKQK
Sbjct: 66 ALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 125
Query: 345 YTQSNGRRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYS 524
YTQSNGRRPFG+S LIVGFD DG LYQTDPSGT+ + AN+IG++ K+V+EFLEK+Y+
Sbjct: 126 YTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 185
Query: 525 QDVVTNEHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIE 698
+D + ++ + +KLAIKALLE VQS +++++++ N P+K L +EIE
Sbjct: 186 EDAIASDSEAIKLAIKALLEVVQSGGRNIELAIIRRNQ--PLKMFSAKEVELYVTEIE 241
>sp|O13268|PSA7_CHICK Proteasome subunit alpha type 7 (GPRO-28)
Length = 249
Score = 287 bits (735), Expect = 2e-77
Identities = 146/235 (62%), Positives = 183/235 (77%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRAITVFSPDGHLFQVEYAQEAVKKGSTAV VRGKD VVLGVEKK++AKLQDERTV+KI
Sbjct: 4 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKIC 63
Query: 183 LIDGHIAMAFAGLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQKYTQSNG 362
+D ++ MAFAGLTADAR++I+RAR+EC+S++LT E P +VEY+ +IA+LKQ+YTQS
Sbjct: 64 ALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKR 123
Query: 363 RRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYSQDVVTN 542
RRPFG+S LIVGFD DGTP LYQTDPSGT+ + AN+IG+ KSV+ EK+Y+ + +
Sbjct: 124 RRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIET 183
Query: 543 EHDTVKLAIKALLEGVQSSADHMDISLMTFNSDVPIKRNFVNYRTLKPSEIETYV 707
+ T+KL IKALLE VQS ++++++M D P+K P EIE YV
Sbjct: 184 DDLTIKLVIKALLEVVQSGGKNIELAVM--RRDQPLK------ILTSPEEIEKYV 230
>sp|P22769|PSA71_DROME Proteasome subunit alpha type 7-1 (Proteasome 28 kDa subunit 1)
(PROS-Dm28.1)
Length = 249
Score = 287 bits (734), Expect = 3e-77
Identities = 132/208 (63%), Positives = 175/208 (84%)
Frame = +3
Query: 3 DRAITVFSPDGHLFQVEYAQEAVKKGSTAVAVRGKDCVVLGVEKKAIAKLQDERTVKKIA 182
DRA+T+FSPDGHL QVEYAQEAV+KGSTAV VRG +CVVLGVEKK++A+LQ++R V+KI
Sbjct: 6 DRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKIC 65
Query: 183 LIDGHIAMAFAGLTADARVLIDRARIECKSYKLTTEVPASVEYLASFIANLKQKYTQSNG 362
++D H+ MAFAGLTADAR++I+RA++EC+S++L E P ++EY+ FIA LKQKYTQSNG
Sbjct: 66 MLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNG 125
Query: 363 RRPFGLSCLIVGFDIDGTPHLYQTDPSGTHFEYYANSIGKNGKSVKEFLEKSYSQDVVTN 542
RRPFG+SCLI GFD DG+ HL+QT+PSG +EY AN+ G++ K V+EF EKSY ++ V N
Sbjct: 126 RRPFGISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVAN 185
Query: 543 EHDTVKLAIKALLEGVQSSADHMDISLM 626
EH VKLAI+ALLE QS +++++++M
Sbjct: 186 EHGAVKLAIRALLEVAQSGQNNLEVAIM 213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,575,061
Number of Sequences: 369166
Number of extensions: 1268214
Number of successful extensions: 3952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3800
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)