Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_B13-2
(383 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58928|YF33_METJA Hypothetical protein MJ1533 39 0.004
sp|P58223|Y4837_ARATH Putative nucleic acid binding protein... 37 0.014
sp|P06105|SC160_YEAST Protein SCP160 (Protein HX) 36 0.031
sp|P38151|PBP2_YEAST PAB1-binding protein 2 35 0.069
sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein ... 34 0.090
sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase D... 34 0.12
sp|P20281|RS3_HALMA 30S ribosomal protein S3P (HmaS3) (HS1) 34 0.12
sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2 33 0.26
sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 ... 33 0.26
sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein ... 33 0.26
>sp|Q58928|YF33_METJA Hypothetical protein MJ1533
Length = 642
Score = 38.9 bits (89), Expect = 0.004
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 22 DEKATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDE 159
D + V +Y+G IIGKGG I ++ D +I++K+ + E+++
Sbjct: 510 DNSIDLIVPEKYIGAIIGKGGKEISKLEDMLGLKISVKEKEKEEEK 555
>sp|P58223|Y4837_ARATH Putative nucleic acid binding protein At4g18375
Length = 606
Score = 37.0 bits (84), Expect = 0.014
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +1
Query: 16 MNDE-----KATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAED 153
+NDE K + VSS+ +G +IGK GS I EI N I I K + +D
Sbjct: 387 INDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKKDD 437
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 67 IIGKGGS---RIREISDECNCRINIKKDQAEDDEVPVLL 174
+IGKGGS RIRE S C +N + + DDE +++
Sbjct: 326 VIGKGGSTIKRIREASGSC-IEVNDSRTKCGDDECVIIV 363
>sp|P06105|SC160_YEAST Protein SCP160 (Protein HX)
Length = 1222
Score = 35.8 bits (81), Expect = 0.031
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +1
Query: 31 ATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAED 153
A I V S+ IIG GG IREISD +IN+ K+ E+
Sbjct: 180 AVIEVPSKCKASIIGSGGRTIREISDAYEVKINVSKEVNEN 220
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +1
Query: 28 KATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQ----AEDDEVPVLL 174
K T+ + + + +IG GS +++I ++ C+I+I ++ ++D V V L
Sbjct: 636 KMTVNIPANSVARLIGNKGSNLQQIREKFACQIDIPNEENNNASKDKTVEVTL 688
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 49 SRYLGLIIGKGGSRIREISDECNCRINI--KKDQAED 153
+R +I+G GGS I++I + + IN+ K D+ D
Sbjct: 1162 TRRFNMIVGPGGSNIKKIREAADVIINVPRKSDKVND 1198
>sp|P38151|PBP2_YEAST PAB1-binding protein 2
Length = 413
Score = 34.7 bits (78), Expect = 0.069
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 4 NYNLMNDEKATIYVSSRYLGLIIGKGGSRIREISDECNCRINIK 135
N+ LMN + I++ +++G +IGK G I + + C I I+
Sbjct: 324 NHLLMNFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQ 367
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 37 IYVSSRYLGLIIGKGGSRIREISD 108
+ + +G IIGK GSR+REI D
Sbjct: 153 LLIPHHLMGCIIGKRGSRLREIED 176
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
Length = 572
Score = 34.3 bits (77), Expect = 0.090
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 43 VSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLL 174
V + +G IIG+GG +I I E C+I I + + E P +L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVL 127
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 25 EKATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD 141
++ T V + GL+IGKGG I+ I+ + + ++++
Sbjct: 355 QEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRN 393
>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 (DEAD-box protein 43)
(DEAD-box protein HAGE) (Helical antigen)
Length = 648
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 43 VSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAE 150
+ S ++G +IG+GGS+I+ I N I I ++Q E
Sbjct: 74 LKSHFVGAVIGRGGSKIKNIQSTTNTTIQIIQEQPE 109
>sp|P20281|RS3_HALMA 30S ribosomal protein S3P (HmaS3) (HS1)
Length = 304
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 61 GLIIGKGGSRIREISDECNCRINIKKDQAEDDEV 162
G++IGKGG IR+I+ E R N+ Q + EV
Sbjct: 52 GMVIGKGGKNIRKITTELEDRFNLDDPQVDVQEV 85
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2
Length = 769
Score = 32.7 bits (73), Expect = 0.26
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 58 LGLIIGKGGSRIREISDECNCRINIKKD 141
+GLIIG+GG +I +I + C++ I D
Sbjct: 220 VGLIIGRGGEQINKIQQDSGCKVQISPD 247
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 58 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDE 159
+G++IG+ G I++I ++ RI K+D E
Sbjct: 397 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE 430
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 10 NLMNDEKATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV 162
N N I + + GL+IGKGG I+++ + ++ +D +++ V
Sbjct: 292 NGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNV 342
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (MAP2 RNA
trans-acting protein 1) (MARTA1)
Length = 721
Score = 32.7 bits (73), Expect = 0.26
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 58 LGLIIGKGGSRIREISDECNCRINIKKD 141
+GLIIG+GG +I +I + C++ I D
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPD 184
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 58 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDE 159
+G++IG+ G I++I ++ RI K+D E
Sbjct: 335 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE 368
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 37 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV 162
I + + GL+IGKGG I+++ + ++ + +D +++ V
Sbjct: 239 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV 280
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (p75)
Length = 707
Score = 32.7 bits (73), Expect = 0.26
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 58 LGLIIGKGGSRIREISDECNCRINIKKD 141
+GLIIG+GG +I +I + C++ I D
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPD 183
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 58 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDE 159
+G++IG+ G I++I ++ RI K+D E
Sbjct: 334 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE 367
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 37 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV 162
I + + GL+IGKGG I+++ + ++ + +D +++ V
Sbjct: 238 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV 279
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,979,244
Number of Sequences: 369166
Number of extensions: 578568
Number of successful extensions: 1702
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)