Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_B08
(376 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01008|VP23_SHV21 Probable capsid protein VP23 (Gene 26 ... 34 0.12
sp|P25811|TRME_BACSU Probable tRNA modification GTPase trmE 31 0.77
sp|Q8RFJ8|SYA_FUSNN Alanyl-tRNA synthetase (Alanine--tRNA l... 30 1.3
sp|Q9DC69|NUEM_MOUSE NADH-ubiquinone oxidoreductase 39 kDa ... 30 1.7
sp|P0ACU6|YIJC_SHIFL Putative HTH-type transcriptional regu... 30 2.2
sp|P40927|MAOX_COLLI NADP-dependent malic enzyme (NADP-ME) 28 5.0
sp|P25214|VP23_EBV Probable capsid protein VP23 (Protein BD... 28 8.5
sp|O14265|VATH_SCHPO Vacuolar ATP synthase subunit H (V-ATP... 28 8.5
sp|P59517|SYN_BUCBP Asparaginyl-tRNA synthetase (Asparagine... 28 8.5
>sp|Q01008|VP23_SHV21 Probable capsid protein VP23 (Gene 26 protein)
Length = 304
Score = 33.9 bits (76), Expect = 0.12
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Frame = +3
Query: 84 DPLLKLQVKIMETIKPI---YPIVCLDKL------ERECFTDTLN--------DLPTLED 212
D + KLQ KI +I P+ + + LD L R+ F D ++ L LE+
Sbjct: 18 DEITKLQKKI-GSILPLQDPHKLQSLDTLGLNAVCSRDVFPDYVHMFSYLSKCTLAILEE 76
Query: 213 IGVDNL--TNLEDRLFYEIRFRREDLYYWDSVGEIATIPP 326
+ DNL T L+ Y+I+ E ++ WD + IPP
Sbjct: 77 VNPDNLILTRLDPSETYQIKNVYEPMFQWDGFSNLTVIPP 116
>sp|P25811|TRME_BACSU Probable tRNA modification GTPase trmE
Length = 459
Score = 31.2 bits (69), Expect = 0.77
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Frame = +3
Query: 66 LVISNMDPLLKLQVKIMETIKPIYPIVCLDKLERECFTDT------LNDLPT-----LED 212
LV++ + L + VK+ E ++ + IV L+K + E DT N P L++
Sbjct: 306 LVLNYSEELSEEDVKLFEAVEGMDVIVILNKTDLEPKIDTERVRELANGRPVVTTSLLKE 365
Query: 213 IGVDNLTNLEDRLFYEIRFRREDLYYWDSVGEIATIPPPPRAV 341
G+++L LFY DL Y + I + RA+
Sbjct: 366 EGINDLEEAIQSLFYTGAIESGDLTYVSNTRHITILQQAKRAI 408
>sp|Q8RFJ8|SYA_FUSNN Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 867
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +3
Query: 90 LLKLQVKIMETIKPIYP--------IVCLDKLERECFTDTLNDLPTLEDIGVDN-LTNLE 242
+ K+ K++E + YP I + K+E E F++TL+ L + +DN LTN +
Sbjct: 322 MYKMVDKVVEKFEIAYPDLRKNVENIRKIVKIEEEKFSNTLDQGIQLVNQEIDNLLTNGK 381
Query: 243 DRLFYEIRFRREDLY 287
++L EI F+ D Y
Sbjct: 382 NKLDGEISFKLYDTY 396
>sp|Q9DC69|NUEM_MOUSE NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial
precursor (Complex I-39KD) (CI-39KD)
Length = 377
Score = 30.0 bits (66), Expect = 1.7
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +3
Query: 3 RYRLDHLIWWLYMVLR--FKPEKLVISNMDPLLKLQVKIMETIKPIYPIVCLDKLERECF 176
RY L HL+ +++ + F P L + + KL + P P DK+ER
Sbjct: 270 RYLLFHLVKYIFGMTHRTFIPYPLPLFVYSWIGKLF-----GLSPFEPWTTKDKVERIHI 324
Query: 177 TDTL-NDLPTLEDIGVDNLTNLEDRLFYEIRFRREDLYYW 293
+D + DLP LED+GV T LE + + RR Y W
Sbjct: 325 SDVMPTDLPGLEDLGVQP-TPLELKSIEVL--RRHRTYRW 361
>sp|P0ACU6|YIJC_SHIFL Putative HTH-type transcriptional regulator yijC
sp|P0ACU5|YIJC_ECOLI Putative HTH-type transcriptional regulator yijC
Length = 215
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 210 DIGVDNLTNLEDRLFYEIRFRREDLYYW 293
D+GV+ LE+RL ++R + YYW
Sbjct: 170 DVGVEQRRQLEERLVLQLRMISKGAYYW 197
>sp|P40927|MAOX_COLLI NADP-dependent malic enzyme (NADP-ME)
Length = 557
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 195 LPTLEDIGVDNLTNLEDRLFYEIRFRR 275
LP + D+G DN T L+D L+ +R +R
Sbjct: 178 LPVMLDVGTDNETLLKDPLYIGLRHKR 204
>sp|P25214|VP23_EBV Probable capsid protein VP23 (Protein BDLF1)
Length = 301
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 195 LPTLEDIGVDNL--TNLEDRLFYEIRFRREDLYYWDSVGEIATIPP 326
L L+++ VD+L T + Y I+ + + + W G ++ +PP
Sbjct: 69 LAVLDEVSVDSLILTKIVPGQTYAIKNKYQPFFQWHGTGSLSVMPP 114
>sp|O14265|VATH_SCHPO Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 54 kDa subunit)
Length = 450
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 88 LFLSYR*KLWKQLSPFTRLFA 150
LFL Y KL + L+P TRLFA
Sbjct: 162 LFLEYLGKLMQSLNPLTRLFA 182
>sp|P59517|SYN_BUCBP Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
Length = 466
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 234 NLEDRLFYEIRFRREDLYYWDSVGEIATIP 323
N+ DR F+E+ +ED +++ + + TIP
Sbjct: 401 NVLDRRFFELNLNKEDYWWYRDLRKYGTIP 430
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,208,234
Number of Sequences: 369166
Number of extensions: 792459
Number of successful extensions: 2275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2274
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)