Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_A20
(293 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CPU4|MGST3_MOUSE Microsomal glutathione S-transferase ... 58 6e-09
sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase ... 55 5e-08
sp|P73795|Y1147_SYNY3 Hypothetical protein sll1147 30 1.7
sp|Q9J5B8|PAP1_FOWPV Poly(A) polymerase catalytic subunit (... 30 2.2
sp|O94477|MYO52_SCHPO Myosin-52 (Myosin type V-2) 29 3.8
sp|Q69ZX8|ABLM3_MOUSE Actin-binding LIM protein 3 (Actin-bi... 28 4.9
sp|O94929|ABLM3_HUMAN Actin-binding LIM protein 3 (Actin-bi... 28 4.9
>sp|Q9CPU4|MGST3_MOUSE Microsomal glutathione S-transferase 3 (Microsomal GST-3)
(Microsomal GST-III)
Length = 153
Score = 58.2 bits (139), Expect = 6e-09
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +1
Query: 82 YGGVLMILAETYLLNFYLMHKEGEGRKQYDVKFPTLYSYTSEE---FNCIQRSHQNYLEK 252
YG VL+ A ++++ +L G+ RK+Y V++P +YS E FNCIQR+HQN LE
Sbjct: 8 YGFVLLTGAASFVMVLHLAINVGKARKKYKVEYPVMYSTDPENGHMFNCIQRAHQNTLEV 67
Query: 253 ITFFIPFLLVSGL 291
F+ FL V G+
Sbjct: 68 YPPFLFFLTVGGV 80
>sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase 3 (Microsomal GST-3)
(Microsomal GST-III)
Length = 152
Score = 55.1 bits (131), Expect = 5e-08
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +1
Query: 82 YGGVLMILAETYLLNFYLMHKEGEGRKQYDVKFPTLYSYTSEE---FNCIQRSHQNYLEK 252
YG VL+ A ++++ +L + RK+Y V++P +YS E FNCIQR+HQN LE
Sbjct: 8 YGFVLLTGAASFIMVAHLAINVSKARKKYKVEYPIMYSTDPENGHIFNCIQRAHQNTLEV 67
Query: 253 ITFFIPFLLVSGL 291
F+ FL V G+
Sbjct: 68 YPPFLFFLAVGGV 80
>sp|P73795|Y1147_SYNY3 Hypothetical protein sll1147
Length = 137
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 97 MILAETYLLNFYLMHKEGEGRKQYDVKFPTLYSYTSEEFNCIQRSHQNYLEKITFFIPFL 276
+I A +L L+ G R +Y V P +E+F + R N LE++ FF+P L
Sbjct: 11 LITALATMLYLVLVINVGRARAKYGVMPPATTG--NEDFERVLRVQYNTLEQLAFFLPGL 68
>sp|Q9J5B8|PAP1_FOWPV Poly(A) polymerase catalytic subunit (Poly(A) polymerase large
subunit) (PAP-L) (VP55)
Length = 472
Score = 29.6 bits (65), Expect = 2.2
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +1
Query: 1 CLSHKSYMMGNYISLHVVVHNEVAMLGYGGVLMILAETYLLNFYLMHKEGEGRKQYDVKF 180
CL + SY SLH + N G VL A T+L+N + K GR+ +K
Sbjct: 175 CLCYGSY------SLHFL--NNKIEYGDIDVLQTNARTFLINIAFLIKFITGRRIVLLKV 226
Query: 181 PTLYSYT---SEEFNCIQRSHQNYLEKITFFIPFLLVSGL 291
P L +Y EE N + + N EK IP +++ +
Sbjct: 227 PFLKNYVIMHDEETNHVMDTF-NIREKTMNMIPKIMIDNM 265
>sp|O94477|MYO52_SCHPO Myosin-52 (Myosin type V-2)
Length = 1516
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 58 HNEVAMLGYGGVLMILAETY--LLNFYLMH-KEGEGRKQYDVKFPTLYSYTSEEFNCIQR 228
+N++ + Y G+++I + L N Y K D P LY+ + + C+ +
Sbjct: 97 YNQLQIYTYSGIVLIAVNPFQRLPNLYTHEIVRAYSEKSRDELDPHLYAIAEDSYKCMNQ 156
Query: 229 SHQN 240
H+N
Sbjct: 157 EHKN 160
>sp|Q69ZX8|ABLM3_MOUSE Actin-binding LIM protein 3 (Actin-binding LIM protein family
member 3) (abLIM3)
Length = 682
Score = 28.5 bits (62), Expect = 4.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 91 LHHTPTSQL-HYEPLHAKKYNFPSYKIY 11
LH TP++ L HY+ ++A + YKIY
Sbjct: 593 LHRTPSADLFHYDSMNAVNWGMREYKIY 620
>sp|O94929|ABLM3_HUMAN Actin-binding LIM protein 3 (Actin-binding LIM protein family
member 3) (abLIM3)
Length = 683
Score = 28.5 bits (62), Expect = 4.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 91 LHHTPTSQL-HYEPLHAKKYNFPSYKIY 11
LH TP++ L HY+ ++A + YKIY
Sbjct: 594 LHRTPSADLFHYDSMNAVNWGMREYKIY 621
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,221,384
Number of Sequences: 369166
Number of extensions: 588819
Number of successful extensions: 1419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 68,354,980
effective HSP length: 67
effective length of database: 55,977,735
effective search space used: 1679332050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)