Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_A01
(436 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9KAA7|RECA_BACHD Protein recA (Recombinase A) 30 2.2
sp|Q9UJW7|ZN229_HUMAN Zinc finger protein 229 29 5.0
sp|Q92562|SAC3_HUMAN SAC domain-containing protein 3 28 6.5
sp|Q11002|CANA_DROME Calpain A (Calcium-activated neutral p... 28 8.4
sp|Q8U039|GLYA_PYRFU Serine hydroxymethyltransferase (Serin... 28 8.4
>sp|Q9KAA7|RECA_BACHD Protein recA (Recombinase A)
Length = 349
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 193 WF*RNDESWSNGRKNGYAWFKKNGKRNEISTEENRIYNHFELSG 324
W+ NDE GR+N + K+N + E E+RI H+ L+G
Sbjct: 288 WYSFNDERLGQGRENAKQFLKENPEAAE--EIESRIREHYGLNG 329
>sp|Q9UJW7|ZN229_HUMAN Zinc finger protein 229
Length = 420
Score = 28.9 bits (63), Expect = 5.0
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 256 KNGKRNE-ISTEENRIYNHFELSGSRIRNSCSGE 354
KNGK E I EE R ++H ELS +I +GE
Sbjct: 82 KNGKDTEYIQDEELRFFSHKELSSCKIWEEVAGE 115
>sp|Q92562|SAC3_HUMAN SAC domain-containing protein 3
Length = 907
Score = 28.5 bits (62), Expect = 6.5
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = -3
Query: 374 EDLNI*YSPLQLFRILEPDNSK*L*IRFSSVEISFLFPFFLNHAYPFFRPLDQDSSFLQN 195
ED N+ Y P R+ PD ++ L I F +V++S F+ +++Y L + + L+
Sbjct: 128 EDTNMIYIPNDSVRVTHPDEARYLRI-FQNVDLS--SNFYFSYSYDLSHSLQYNLTVLRM 184
Query: 194 QIQSLAS 174
++ L S
Sbjct: 185 PLEMLKS 191
>sp|Q11002|CANA_DROME Calpain A (Calcium-activated neutral proteinase A) (CANP A)
[Contains: Calpain A catalytic subunit]
Length = 828
Score = 28.1 bits (61), Expect = 8.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 351 SATTVPYSGTRQFKVIVNSILFGGNLIPFPIF 256
S++ PYS + ++ I+NS L G+L P+F
Sbjct: 63 SSSLGPYSEVQDYETILNSCLASGSLFEDPLF 94
>sp|Q8U039|GLYA_PYRFU Serine hydroxymethyltransferase (Serine methylase) (SHMT)
Length = 427
Score = 28.1 bits (61), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 294 ILFGGNLIPFPIFLKPCIPILSPIG 220
++FGG+L PFP +K P+ +G
Sbjct: 166 VMFGGSLFPFPHPVKELAPVAKEVG 190
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,383,960
Number of Sequences: 369166
Number of extensions: 697690
Number of successful extensions: 1638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)