Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_P14
(406 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 212 2e-55
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 212 2e-55
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 212 2e-55
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 212 2e-55
sp|P02553|TBA_LYTPI Tubulin alpha chain 212 2e-55
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 211 3e-55
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 211 3e-55
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 211 6e-55
sp|P02550|TBA_PIG Tubulin alpha chain 210 8e-55
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 210 1e-54
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 212 bits (540), Expect = 2e-55
Identities = 100/101 (99%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 212 bits (540), Expect = 2e-55
Identities = 100/101 (99%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 212 bits (540), Expect = 2e-55
Identities = 100/101 (99%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 212 bits (540), Expect = 2e-55
Identities = 100/101 (99%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P02553|TBA_LYTPI Tubulin alpha chain
Length = 161
Score = 212 bits (540), Expect = 2e-55
Identities = 100/101 (99%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 50 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 109
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 110 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 150
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 211 bits (538), Expect = 3e-55
Identities = 99/101 (98%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 211 bits (538), Expect = 3e-55
Identities = 99/101 (98%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 301 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 360
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 361 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 211 bits (536), Expect = 6e-55
Identities = 99/100 (99%), Positives = 100/100 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 306
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 210 bits (535), Expect = 8e-55
Identities = 98/101 (97%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
TIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 210 bits (534), Expect = 1e-54
Identities = 98/101 (97%), Positives = 101/101 (100%)
Frame = +1
Query: 7 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 186
+IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 SIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 187 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 309
AKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,358,679
Number of Sequences: 369166
Number of extensions: 672818
Number of successful extensions: 2318
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2222
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)