Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_P08
(586 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15162|PLS1_HUMAN Phospholipid scramblase 1 (PL scrambla... 35 0.18
sp|Q02308|HLES_DROME Hairless protein 30 3.4
sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceo... 30 4.4
sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation fac... 30 4.4
sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceo... 29 7.5
sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associ... 29 9.8
sp|O16005|OPSD_SEPOF Rhodopsin 29 9.8
>sp|O15162|PLS1_HUMAN Phospholipid scramblase 1 (PL scramblase 1) (Ca(2+)-dependent
phospholipid scramblase 1) (Erythrocyte phospholipid
scramblase) (MmTRA1b)
Length = 318
Score = 34.7 bits (78), Expect = 0.18
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 354 PPAQCTYPQGQTVYPPPPIGNSDYQRAAYPV 446
PP YP Q YPPPP G+S A +PV
Sbjct: 33 PPGYSGYPGPQVSYPPPPAGHSGPGPAGFPV 63
>sp|Q02308|HLES_DROME Hairless protein
Length = 1077
Score = 30.4 bits (67), Expect = 3.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 335 PGSNILSTSPVHISTRPNRISSS 403
PGS+ STSP +ST+P R++SS
Sbjct: 640 PGSSSSSTSPATLSTQPTRLNSS 662
>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 475
Score = 30.0 bits (66), Expect = 4.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 312 PAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDYQRAAYP----VYPTN 458
P A V Q +PPA +PQ V+P PP G +P V+P+N
Sbjct: 392 PPAPAVHPQAPGVHPPAPGIHPQAPGVHPQPPPGVHPAAPGVHPQPPGVHPSN 444
>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1 (eIF-4-gamma 1)
(eIF-4G1) (eIF-4G 1) (p220)
Length = 1600
Score = 30.0 bits (66), Expect = 4.4
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +3
Query: 267 SARTGIQRRGRVVAQPAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDY--QRAAY 440
SA + +Q PAA + Q P+Q +YP Q Y P G S Y Y
Sbjct: 61 SAASRVQSAAPARPGPAAHVYPAGSQVMMIPSQISYPASQGAYYIPGQGRSTYVVPTQQY 120
Query: 441 PVYP 452
PV P
Sbjct: 121 PVQP 124
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 464
Score = 29.3 bits (64), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 312 PAAVTVISQDQTYYPPAQCTYPQGQTVYPPPP 407
PAA V Q +PPA +PQ V+P PP
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPP 412
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D)
sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
Length = 240
Score = 28.9 bits (63), Expect = 9.8
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 285 QRRGRVVAQPAAVTV-ISQDQTYYPPAQCTYPQGQTVYPPPPIGNS 419
Q RG V A A T I+ T YPP + T PPPP+G +
Sbjct: 145 QGRGTVAAAAVAATASIAGAPTQYPPGRGT--------PPPPVGRA 182
>sp|O16005|OPSD_SEPOF Rhodopsin
Length = 464
Score = 28.9 bits (63), Expect = 9.8
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +3
Query: 315 AAVTVISQDQTYYPPAQCTYPQG---QTVYPPPPIGNSDYQRAAYPVYP 452
A + + Q Q YPP PQG YPPPP Y YP P
Sbjct: 375 AMMQKMQQQQAAYPPQGAYPPQGGYPPQGYPPPP-AQGGYPPQGYPPPP 422
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,314,239
Number of Sequences: 369166
Number of extensions: 1083456
Number of successful extensions: 3316
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3299
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)