Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_P03
(463 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60779|GAS8_MOUSE Growth-arrest-specific protein 8 (Grow... 167 1e-41
sp|O95995|GAS8_HUMAN Growth-arrest-specific protein 8 (Grow... 165 5e-41
sp|Q8MT08|GAS8_DROME Growth-arrest-specific protein 8 homolog 92 7e-19
sp|O15697|GAS8_TRYBR Trypanin (T lymphocyte-triggering fact... 51 1e-06
sp|P34611|NCL1_CAEEL B-box type zinc-finger protein ncl-1 33 0.40
sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding... 32 0.53
sp|Q8VDD5|MYH9_MOUSE Myosin-9 (Myosin heavy chain, nonmuscl... 32 0.69
sp|Q9UKX3|MYH13_HUMAN Myosin-13 (Myosin heavy chain, skelet... 32 0.69
sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscl... 31 1.2
sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA 31 1.5
>sp|Q60779|GAS8_MOUSE Growth-arrest-specific protein 8 (Growth arrest-specific 11)
Length = 478
Score = 167 bits (423), Expect = 1e-41
Identities = 83/115 (72%), Positives = 96/115 (83%)
Frame = +1
Query: 1 KNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDLQY 180
KN+LLERKL L ++EK+E Q NEVL+ASNLDP AL +V+RKLEDVL+SKN+ IKDLQY
Sbjct: 363 KNLLLERKLQALNAAVEKREVQFNEVLAASNLDPTALTLVSRKLEDVLESKNTTIKDLQY 422
Query: 181 ELARVCKAHNDQLRTYEAKLSQFGIPSEELGFKPLESTVGNQSLGYGPAGLVSAP 345
ELARVCKAHND LRTYEAKL FGIP + +GFKPLE+ V Q+LG GPAGLV AP
Sbjct: 423 ELARVCKAHNDLLRTYEAKLLAFGIPLDNVGFKPLETAVIGQTLGQGPAGLVGAP 477
>sp|O95995|GAS8_HUMAN Growth-arrest-specific protein 8 (Growth arrest-specific 11)
Length = 478
Score = 165 bits (417), Expect = 5e-41
Identities = 82/115 (71%), Positives = 96/115 (83%)
Frame = +1
Query: 1 KNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDLQY 180
KN++LERKL L+ ++EKKE Q NEVL+ASNLDP AL +V+RKLEDVL+SKNS IKDLQY
Sbjct: 363 KNLVLERKLQALSAAVEKKEVQFNEVLAASNLDPAALTLVSRKLEDVLESKNSTIKDLQY 422
Query: 181 ELARVCKAHNDQLRTYEAKLSQFGIPSEELGFKPLESTVGNQSLGYGPAGLVSAP 345
ELA+VCKAHND LRTYEAKL FGIP + +GFKPLE+ V Q+LG GPAGLV P
Sbjct: 423 ELAQVCKAHNDLLRTYEAKLLAFGIPLDNVGFKPLETAVIGQTLGQGPAGLVGTP 477
>sp|Q8MT08|GAS8_DROME Growth-arrest-specific protein 8 homolog
Length = 479
Score = 91.7 bits (226), Expect = 7e-19
Identities = 48/116 (41%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Frame = +1
Query: 1 KNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPN---ALAIVTRKLEDVLDSKNSAIKD 171
KNVLLERK+ L EK+ L+E ++ PN L + ++ +++D KN I D
Sbjct: 363 KNVLLERKIAALMREDEKRSIVLHETIATCA--PNFAEKLTSLDERVGNIIDEKNKIILD 420
Query: 172 LQYELARVCKAHNDQLRTYEAKLSQFGIPSEELGFKPLESTVGNQSLGYGPAGLVS 339
L+YE+ + KAH+D L TYE KL Q+G+P++ELGFKP+ + Q GPAG+++
Sbjct: 421 LRYEVTKARKAHDDLLETYECKLKQYGVPTDELGFKPIRNRDQQQLYVCGPAGIIT 476
>sp|O15697|GAS8_TRYBR Trypanin (T lymphocyte-triggering factor) (TLTF)
Length = 453
Score = 50.8 bits (120), Expect = 1e-06
Identities = 28/87 (32%), Positives = 48/87 (55%)
Frame = +1
Query: 1 KNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDLQY 180
+N +L++KL +E+++ QL VL A NL+P L ++ ++++ L KN IKDL +
Sbjct: 360 RNEVLQQKLIESHALVEERDVQLEGVLRAMNLEPKTLELIATEVDEWLQRKNQLIKDLHF 419
Query: 181 ELARVCKAHNDQLRTYEAKLSQFGIPS 261
EL + K ++ L E + I S
Sbjct: 420 ELKKGEKLYSATLLEMERRCQTANIAS 446
>sp|P34611|NCL1_CAEEL B-box type zinc-finger protein ncl-1
Length = 851
Score = 32.7 bits (73), Expect = 0.40
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Frame = +1
Query: 13 LERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDLQYELAR 192
++ K LT SL AQL E +S N + ++ + + + ++A Q +L
Sbjct: 293 VDNKQQVLTASLHNAHAQLEETVS------NLINVIQDQKKTLAKDIDNAFAAKQIQLTM 346
Query: 193 VCKAHND------QLRTYEAKLSQFGIPSEELGFKPLESTVGNQSLGYGP--AGLVSAP 345
V K Q + +L F P+E + FK L T LG+ P +G++ P
Sbjct: 347 VDKRIQSMADKLSQTIEFSRRLMSFASPAEVMVFKQLLDTRLQLFLGFNPDTSGVLMTP 405
>sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding subunit clpA homolog
Length = 885
Score = 32.3 bits (72), Expect = 0.53
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 100 PNALAIVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDQLRTYEAKLSQFGIPSEELG 273
P + + ++L+D L K +IK+ +++A+ H ++RT+ + Q + +E LG
Sbjct: 420 PRGMKRLLKELQDTLRDKEESIKEHDFDIAKQLVDHEMEVRTHIRIMKQSILTNETLG 477
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1960
Score = 32.0 bits (71), Expect = 0.69
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +1
Query: 13 LERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDL----QY 180
LE +++ L E LE + A N+ L + +LED LDS +A ++L +
Sbjct: 1109 LETQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDS-TAAQQELRSKREQ 1167
Query: 181 ELARVCKAHNDQLRTYEAKLSQ 246
E++ + K D+ +T+EA++ +
Sbjct: 1168 EVSILKKTLEDEAKTHEAQIQE 1189
>sp|Q9UKX3|MYH13_HUMAN Myosin-13 (Myosin heavy chain, skeletal muscle, extraocular)
(MyHC-eo)
Length = 1938
Score = 32.0 bits (71), Expect = 0.69
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +1
Query: 7 VLLERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDLQYEL 186
+LLE K+ LTE LE++E +E+++ R LED S I DL+ L
Sbjct: 917 ILLEAKVKELTERLEEEEEMNSELVAKK-----------RNLEDKCSSLKRDIDDLELTL 965
Query: 187 ARVCK 201
+V K
Sbjct: 966 TKVEK 970
>sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1959
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 13 LERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDL----QY 180
LE ++ L E LE + A N+ L + +LED LDS +A ++L +
Sbjct: 1109 LESQITELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDS-TAAQQELRSKREQ 1167
Query: 181 ELARVCKAHNDQLRTYEAKLSQ 246
E+ + K D+ +T+EA++ +
Sbjct: 1168 EVTVLKKTLEDEAKTHEAQIQE 1189
>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA
Length = 215
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 1 KNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDLQY 180
K+ L+ ++N + + + + +L + N ++ LED L++ SA+K+ Q
Sbjct: 83 KHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMV--LEDALENGTSALKNKQM 140
Query: 181 ELARVCKAHNDQL 219
E R+ + HN+ +
Sbjct: 141 EFVRMMRKHNEMV 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,468,775
Number of Sequences: 369166
Number of extensions: 937556
Number of successful extensions: 2626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2624
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)