Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_O11
(317 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6X6Z7|TEKT3_MOUSE Tektin-3 29 2.9
sp|P40459|PANC_YEAST Pantoate--beta-alanine ligase (Pantoth... 28 8.5
>sp|Q6X6Z7|TEKT3_MOUSE Tektin-3
Length = 490
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 1 EEVTMNVQTPLIQSKDFLESMQFTNTPFFHDYSDATTTIHIDNSK 135
+E +Q L S+D L+S+ T HD + T++ID K
Sbjct: 428 DETIQTLQQRLRDSEDTLQSLAHTKATLEHDLAVKANTLYIDQEK 472
>sp|P40459|PANC_YEAST Pantoate--beta-alanine ligase (Pantothenate synthetase)
(Pantoate-activating enzyme)
Length = 345
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 93 VMKKWCVCKLHAF*EIFGLY 34
V KKWCV LH F ++F L+
Sbjct: 12 VYKKWCVLILHCFIQVFILH 31
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,575,022
Number of Sequences: 369166
Number of extensions: 509303
Number of successful extensions: 898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)