Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_N10
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 72 1e-12
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 68 2e-11
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 68 2e-11
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 68 2e-11
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 68 2e-11
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 68 2e-11
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 67 3e-11
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 67 3e-11
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 67 3e-11
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 67 3e-11
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 72.0 bits (175), Expect = 1e-12
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V+G VKWF+ K+GYGFI+ DD +D+FVH DGE+V FD+V+G
Sbjct: 33 VSGTVKWFNVKSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEG 90
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP G +V G K
Sbjct: 91 EKGNEAANVTGPEGSNVQGSK 111
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/81 (46%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G
Sbjct: 37 VLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 94
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP G V G K
Sbjct: 95 EKGAEAANVTGPEGVPVQGSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/81 (46%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G
Sbjct: 57 VLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 114
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP G V G K
Sbjct: 115 EKGAEAANVTGPGGVPVQGSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/81 (46%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G
Sbjct: 59 VLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 116
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP G V G K
Sbjct: 117 EKGAEAANVTGPGGVPVQGSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/81 (46%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G
Sbjct: 56 VLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 113
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP G V G K
Sbjct: 114 EKGAEAANVTGPGGVPVQGSK 134
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 67.8 bits (164), Expect = 2e-11
Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G
Sbjct: 94 VLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 151
Query: 170 AKGLEARNVTGPNGGDVIGGKPYEP 244
KG EA NVTGP GG + G Y P
Sbjct: 152 EKGAEATNVTGP-GGVPVKGSRYAP 175
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 67.4 bits (163), Expect = 3e-11
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G
Sbjct: 83 VLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 140
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP+G V G +
Sbjct: 141 EKGAEAANVTGPDGVPVEGSR 161
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 67.4 bits (163), Expect = 3e-11
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D + +D+FVH DGE V FD+V+G
Sbjct: 42 VQGTVKWFNVRNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP G V G +
Sbjct: 100 EKGAEAANVTGPGGVPVKGSR 120
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 67.4 bits (163), Expect = 3e-11
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G
Sbjct: 91 VLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 148
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP+G V G +
Sbjct: 149 EKGAEAANVTGPDGVPVEGSR 169
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 67.4 bits (163), Expect = 3e-11
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQG 169
V G VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G
Sbjct: 83 VLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 140
Query: 170 AKGLEARNVTGPNGGDVIGGK 232
KG EA NVTGP+G V G +
Sbjct: 141 EKGAEAANVTGPDGVPVEGSR 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,066,065
Number of Sequences: 369166
Number of extensions: 824769
Number of successful extensions: 3232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2841
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)