Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_N07
(363 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17) 53 3e-07
sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) ... 53 3e-07
sp|P42577|FRIS_LYMST Soma ferritin 51 7e-07
sp|P17663|FRIH1_XENLA Ferritin heavy chain 1 51 1e-06
sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H) 49 4e-06
sp|P19132|FRIH_RAT Ferritin heavy chain (Ferritin H subunit) 48 6e-06
sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit) 48 6e-06
sp|Q9XT73|FRIH_TRIVU Ferritin heavy chain (Ferritin H subunit) 48 6e-06
sp|P29389|FRIH_CRIGR Ferritin heavy chain (Ferritin H subunit) 48 8e-06
sp|P19975|FRI1_PEA Ferritin 1, chloroplast precursor 48 8e-06
>sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17)
Length = 176
Score = 52.8 bits (125), Expect = 3e-07
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +2
Query: 5 IRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLS 184
+++Q RG +V D+K E+ E G +E Q L EK V+Q L L KLA +K D
Sbjct: 67 LKYQNKRGGRVVLQDIKKPERD-EWGNTLEATQAALQLEKTVNQALLDLHKLASDKVDAH 125
Query: 185 LSSFLEDRVILRQTKVIRKRANQLRDLKR 271
L FLE + Q K +++ + + +LKR
Sbjct: 126 LCDFLESEYLEEQVKAMKQLGDYITNLKR 154
>sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) (Ferritin X) (Ferritin H')
Length = 176
Score = 52.8 bits (125), Expect = 3e-07
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Frame = +2
Query: 5 IRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLS 184
+++Q RG +V D+K E+ E G +E Q L EK V+Q L L KLA +K D
Sbjct: 67 MKYQNKRGGRVVLQDIKKPERD-EWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPH 125
Query: 185 LSSFLEDRVILRQTKVIRKRANQLRDLKR---SEDDMTPFLTSK 307
L FLE + Q K I++ + + +LKR E+ M +L K
Sbjct: 126 LCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDK 169
>sp|P42577|FRIS_LYMST Soma ferritin
Length = 174
Score = 51.2 bits (121), Expect = 7e-07
Identities = 30/102 (29%), Positives = 53/102 (51%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDL 181
L+++Q RG ++ D+K ++ E G +E Q L EK V+Q L L KL +D
Sbjct: 67 LMKYQNKRGGRIVLQDIKKPDRD-EWGTGLEAMQVALQLEKSVNQSLLDLHKLCTSHDDA 125
Query: 182 SLSSFLEDRVILRQTKVIRKRANQLRDLKRSEDDMTPFLTSK 307
++ FLE + Q K I++ ++ + +LKR + ++ K
Sbjct: 126 QMADFLESEFLEEQVKSIKELSDYITNLKRVGPGLGEYIFDK 167
>sp|P17663|FRIH1_XENLA Ferritin heavy chain 1
Length = 176
Score = 50.8 bits (120), Expect = 1e-06
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = +2
Query: 5 IRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDLS 184
+++Q RG +V D+K E+ E +E Q L EK V+Q L L KLA +K D
Sbjct: 67 LKYQNKRGGRVVLQDIKKPERD-EWSNTLEAMQAALQLEKTVNQALLDLHKLASDKVDPQ 125
Query: 185 LSSFLEDRVILRQTKVIRKRANQLRDLKR 271
L FLE + Q K +++ + + +LKR
Sbjct: 126 LCDFLESEYLEEQVKAMKELGDYITNLKR 154
>sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H)
Length = 176
Score = 48.9 bits (115), Expect = 4e-06
Identities = 32/90 (35%), Positives = 47/90 (52%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKNDL 181
L++ Q RG ++ DVK E+ E G +E Q L EK V+Q L L K+ +K D
Sbjct: 66 LMKDQNKRGGRIVLQDVKKPERD-EWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDP 124
Query: 182 SLSSFLEDRVILRQTKVIRKRANQLRDLKR 271
L FLE + Q K I++ + + +LKR
Sbjct: 125 HLCDFLETEYLEEQVKSIKQLGDYITNLKR 154
>sp|P19132|FRIH_RAT Ferritin heavy chain (Ferritin H subunit)
Length = 182
Score = 48.1 bits (113), Expect = 6e-06
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVK-PVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKND 178
L++ Q RG ++ D+K P ESG + + L+ EK V+Q L L KLA +KND
Sbjct: 70 LMKLQNQRGGRIFLQDIKKPDRDDWESG--LNAMRCALHLEKSVNQSLLELHKLATDKND 127
Query: 179 LSLSSFLEDRVILRQTKVIRKRANQLRDLKR---SEDDMTPFLTSK 307
L F+E + Q K I++ + + +L++ E M +L K
Sbjct: 128 PHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDK 173
>sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit)
Length = 164
Score = 48.1 bits (113), Expect = 6e-06
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVK-PVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKND 178
L++ Q RG ++ D+K P ESG + + L+ EK V+Q L L KLA +KND
Sbjct: 51 LMKLQNQRGGRIFLQDIKKPEYDDWESG--LNAMECALHLEKSVNQSLLELHKLATDKND 108
Query: 179 LSLSSFLEDRVILRQTKVIRKRANQLRDLKR---SEDDMTPFLTSK 307
L F+E + Q K I++ + + +L++ E M +L K
Sbjct: 109 PHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDK 154
>sp|Q9XT73|FRIH_TRIVU Ferritin heavy chain (Ferritin H subunit)
Length = 183
Score = 48.1 bits (113), Expect = 6e-06
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVK-PVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKND 178
L++ Q RG ++ D+K P ESG + + L+ EK+V+Q L L KLA +KND
Sbjct: 70 LMKLQNQRGGRIFLQDIKKPDRDDWESG--LNAMECALHLEKNVNQSLLELHKLATDKND 127
Query: 179 LSLSSFLEDRVILRQTKVIRKRANQLRDLKR 271
L F+E + Q K I++ + + +L++
Sbjct: 128 PHLCDFIETHYLDEQVKAIKQLGDHVTNLRK 158
>sp|P29389|FRIH_CRIGR Ferritin heavy chain (Ferritin H subunit)
Length = 186
Score = 47.8 bits (112), Expect = 8e-06
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVK-PVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEKND 178
L++ Q RG ++ D+K P ESG + + L+ EK V+Q L L KLA +KND
Sbjct: 75 LMKLQNQRGGRIFLQDIKKPDRDDWESG--LNAMECALHLEKSVNQSLLELHKLATDKND 132
Query: 179 LSLSSFLEDRVILRQTKVIRKRANQLRDLKR---SEDDMTPFLTSK 307
L F+E + Q K I++ + + +L++ E M +L K
Sbjct: 133 PHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDK 178
>sp|P19975|FRI1_PEA Ferritin 1, chloroplast precursor
Length = 253
Score = 47.8 bits (112), Expect = 8e-06
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVE---QHIESGKPVEIFQTILNFEKDVHQLTLRLCKLAWEK 172
L+++Q RG +V + +K V +H+E G + + L+ EK ++ L + +A
Sbjct: 140 LMKYQNTRGGRVVLHPIKDVPSEFEHVEKGDALYAMELALSLEKLTNEKLLNVHSVAERN 199
Query: 173 NDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR 271
NDL ++ F+E + Q + I+K + + L+R
Sbjct: 200 NDLEMTHFIEGEYLAEQVEAIKKISEYVAQLRR 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,957,793
Number of Sequences: 369166
Number of extensions: 603167
Number of successful extensions: 1844
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)