Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_N05
(674 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CP18|DNAJ_STAES Chaperone protein dnaJ 96 1e-19
sp|Q8KCD8|DNAJ_CHLTE Chaperone protein dnaJ 96 1e-19
sp|O89114|DNJB5_MOUSE DnaJ homolog subfamily B member 5 (He... 95 1e-19
sp|Q5HNW7|DNAJ_STAEQ Chaperone protein dnaJ 95 1e-19
sp|P63972|DNAJ_STAAW Chaperone protein dnaJ >gi|62900218|sp... 95 2e-19
sp|Q6GGC1|DNAJ_STAAR Chaperone protein dnaJ 95 2e-19
sp|O75953|DNJB5_HUMAN DnaJ homolog subfamily B member 5 (He... 94 2e-19
sp|Q45552|DNAJ_BACST Chaperone protein dnaJ 94 2e-19
sp|P61441|DNAJ_LEPIN Chaperone protein dnaJ >gi|47606734|sp... 94 2e-19
sp|Q55505|DNAJ1_SYNY3 Chaperone protein dnaJ 1 94 4e-19
>sp|Q8CP18|DNAJ_STAES Chaperone protein dnaJ
Length = 373
Score = 95.5 bits (236), Expect = 1e-19
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = +2
Query: 2 SEEDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKEKSAEEKFLKITKAYEILSDQNK 181
++ DYYE+LGV ++A K IK AYRKL+ KYHPD NKE+ A+EKF +I++AYE+LSD+NK
Sbjct: 2 AKRDYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENK 61
Query: 182 RQQYDQFG 205
R YDQFG
Sbjct: 62 RANYDQFG 69
>sp|Q8KCD8|DNAJ_CHLTE Chaperone protein dnaJ
Length = 403
Score = 95.5 bits (236), Expect = 1e-19
Identities = 44/70 (62%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 EEDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKE-KSAEEKFLKITKAYEILSDQNK 181
+ DYYE+LGV R+ADK IK AYRKLA+KYHPDKN + K AEEKF ++ +AYE+LS+ +K
Sbjct: 2 KRDYYEILGVARSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEVNEAYEVLSNDDK 61
Query: 182 RQQYDQFGES 211
R++YDQFG +
Sbjct: 62 RRRYDQFGHA 71
>sp|O89114|DNJB5_MOUSE DnaJ homolog subfamily B member 5 (Heat shock protein Hsp40-3)
(Heat shock protein cognate 40) (Hsc40)
Length = 348
Score = 95.1 bits (235), Expect = 1e-19
Identities = 41/67 (61%), Positives = 55/67 (82%)
Frame = +2
Query: 8 EDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKEKSAEEKFLKITKAYEILSDQNKRQ 187
+DYY++LG+P A++ IK AYRK+A+KYHPDKNKE +AEEKF +I +AY++LSD KR
Sbjct: 3 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRS 62
Query: 188 QYDQFGE 208
YDQ+GE
Sbjct: 63 LYDQYGE 69
>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein dnaJ
Length = 373
Score = 95.1 bits (235), Expect = 1e-19
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = +2
Query: 2 SEEDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKEKSAEEKFLKITKAYEILSDQNK 181
++ DYYE+LGV ++A K IK AYRKL+ KYHPD NKE+ A+EKF +I++AYE+LSD+NK
Sbjct: 2 AKRDYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENK 61
Query: 182 RQQYDQFG 205
R YDQFG
Sbjct: 62 RVNYDQFG 69
>sp|P63972|DNAJ_STAAW Chaperone protein dnaJ
sp|Q6G8Y8|DNAJ_STAAS Chaperone protein dnaJ
sp|P63971|DNAJ_STAAN Chaperone protein dnaJ
sp|P63970|DNAJ_STAAM Chaperone protein dnaJ
sp|Q5HFI1|DNAJ_STAAC Chaperone protein dnaJ
Length = 379
Score = 94.7 bits (234), Expect = 2e-19
Identities = 42/68 (61%), Positives = 55/68 (80%)
Frame = +2
Query: 2 SEEDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKEKSAEEKFLKITKAYEILSDQNK 181
++ DYYE+LG+ ++A K IK AYRKL+ KYHPD NKE+ A+EKF +I++AYE+LSD NK
Sbjct: 2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNK 61
Query: 182 RQQYDQFG 205
R YDQFG
Sbjct: 62 RASYDQFG 69
>sp|Q6GGC1|DNAJ_STAAR Chaperone protein dnaJ
Length = 379
Score = 94.7 bits (234), Expect = 2e-19
Identities = 42/68 (61%), Positives = 55/68 (80%)
Frame = +2
Query: 2 SEEDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKEKSAEEKFLKITKAYEILSDQNK 181
++ DYYE+LG+ ++A K IK AYRKL+ KYHPD NKE+ A+EKF +I++AYE+LSD NK
Sbjct: 2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNK 61
Query: 182 RQQYDQFG 205
R YDQFG
Sbjct: 62 RASYDQFG 69
>sp|O75953|DNJB5_HUMAN DnaJ homolog subfamily B member 5 (Heat shock protein Hsp40-3)
(Heat shock protein cognate 40) (Hsc40) (Hsp40-2)
Length = 348
Score = 94.4 bits (233), Expect = 2e-19
Identities = 41/67 (61%), Positives = 55/67 (82%)
Frame = +2
Query: 8 EDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKEKSAEEKFLKITKAYEILSDQNKRQ 187
+DYY++LG+P A++ IK AYRK+A+KYHPDKNKE +AEEKF +I +AY++LSD KR
Sbjct: 3 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRG 62
Query: 188 QYDQFGE 208
YDQ+GE
Sbjct: 63 LYDQYGE 69
>sp|Q45552|DNAJ_BACST Chaperone protein dnaJ
Length = 380
Score = 94.4 bits (233), Expect = 2e-19
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +2
Query: 2 SEEDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKEKSAEEKFLKITKAYEILSDQNK 181
++ DYYE+LGV +NA K+ IK AYRKL+ KYHPD NKE A EKF +I +AYE+LSD K
Sbjct: 2 AKRDYYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEPDAAEKFKEIKEAYEVLSDDQK 61
Query: 182 RQQYDQFGES 211
R YDQFG++
Sbjct: 62 RAHYDQFGQA 71
>sp|P61441|DNAJ_LEPIN Chaperone protein dnaJ
sp|P61440|DNAJ_LEPIC Chaperone protein dnaJ
Length = 372
Score = 94.4 bits (233), Expect = 2e-19
Identities = 45/71 (63%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 SEEDYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNK-EKSAEEKFLKITKAYEILSDQN 178
SE YY++LGV ++A+ + IKSAYRKLA+KYHPDKNK K +EEKF + T+AYEIL D
Sbjct: 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK 61
Query: 179 KRQQYDQFGES 211
KRQ YDQFG++
Sbjct: 62 KRQAYDQFGKA 72
>sp|Q55505|DNAJ1_SYNY3 Chaperone protein dnaJ 1
Length = 377
Score = 93.6 bits (231), Expect = 4e-19
Identities = 44/67 (65%), Positives = 53/67 (79%)
Frame = +2
Query: 11 DYYELLGVPRNADKKVIKSAYRKLAVKYHPDKNKEKSAEEKFLKITKAYEILSDQNKRQQ 190
DYY+ LGV R+ADK IK AYR+LA KYHPD NKE AEEKF +I +AYE+LS+ RQ+
Sbjct: 4 DYYQTLGVTRDADKDEIKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSEPEIRQR 63
Query: 191 YDQFGES 211
YDQFGE+
Sbjct: 64 YDQFGEA 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,316,671
Number of Sequences: 369166
Number of extensions: 1221173
Number of successful extensions: 4361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4123
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)