Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_M24
(403 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 198 4e-51
sp|P41116|RL8_XENLA 60S ribosomal protein L8 198 4e-51
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 198 4e-51
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 196 1e-50
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 196 1e-50
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 194 4e-50
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 192 2e-49
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 189 1e-48
sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 189 2e-48
sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4) 189 2e-48
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 198 bits (503), Expect = 4e-51
Identities = 90/120 (75%), Positives = 105/120 (87%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKR
Sbjct: 134 ATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 365
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 198 bits (503), Expect = 4e-51
Identities = 90/120 (75%), Positives = 105/120 (87%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKR
Sbjct: 134 ATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 365
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 198 bits (503), Expect = 4e-51
Identities = 90/120 (75%), Positives = 105/120 (87%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKR
Sbjct: 134 ATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 365
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 196 bits (499), Expect = 1e-50
Identities = 89/120 (74%), Positives = 105/120 (87%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A ++SHN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKR
Sbjct: 134 ATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 365
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 196 bits (499), Expect = 1e-50
Identities = 89/120 (74%), Positives = 104/120 (86%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKR
Sbjct: 134 ATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 365
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+A RRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVRRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 194 bits (494), Expect = 4e-50
Identities = 88/120 (73%), Positives = 104/120 (86%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A ++SHN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYK KR
Sbjct: 134 ATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 365
NCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 194 NCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 192 bits (489), Expect = 2e-49
Identities = 88/117 (75%), Positives = 102/117 (87%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A +++HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAYHKYK KR
Sbjct: 134 ASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 356
NCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 194 NCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 189 bits (481), Expect = 1e-48
Identities = 87/117 (74%), Positives = 101/117 (86%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A +++HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAY KYK KR
Sbjct: 134 ASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 356
NCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 194 NCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8
Length = 260
Score = 189 bits (480), Expect = 2e-48
Identities = 86/124 (69%), Positives = 104/124 (83%)
Frame = +3
Query: 6 AIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKR 185
A +++HN +T KTR++LPSG KK++ S RAMIG+VAGGGR +KP+LKAGR+YHKYKAKR
Sbjct: 134 ATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKR 193
Query: 186 NCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 365
N WPRVRGV MNPV+HPHGGGNHQHIG PSTV R G+KVGL+AARRTG +RG K +K
Sbjct: 194 NSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRGGKPVK 253
Query: 366 TTKQ 377
TK+
Sbjct: 254 FTKE 257
>sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4)
Length = 253
Score = 189 bits (479), Expect = 2e-48
Identities = 84/119 (70%), Positives = 101/119 (84%)
Frame = +3
Query: 9 IIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRN 188
IIV H+ +T KTRVKLPSG KK++ SS R ++GIVAGGGRI+KP+LKAGRA+HKY+ KRN
Sbjct: 134 IIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRN 193
Query: 189 CWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 365
CWPR RGV MNPVDHPHGGGNHQH+G +TV R + PG+KVGL+AARRTGLLRG ++
Sbjct: 194 CWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAAVE 252
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,605,483
Number of Sequences: 369166
Number of extensions: 871286
Number of successful extensions: 2611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)