Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_M20
(619 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 246 3e-65
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 244 2e-64
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 243 4e-64
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 242 6e-64
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 241 8e-64
sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenas... 241 1e-63
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 241 1e-63
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 240 2e-63
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 240 2e-63
sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 239 4e-63
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 246 bits (628), Expect = 3e-65
Identities = 121/170 (71%), Positives = 139/170 (81%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
D+FGI EGLMTT+HA+TATQKTVDGPS KLWRDGRGA QNIIP IPELN
Sbjct: 164 DNFGIVEGLMTTVHAFTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELN 223
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GKITGMAFRVP P+VSVVDLTC+L+K AKYD+IKAAIK ASE MKGIL YT+++VVS D
Sbjct: 224 GKITGMAFRVPTPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTD 283
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F GD +SSIFDA AGI L + FVKLV+WYDNE GYS RV+DL+ HM++K+
Sbjct: 284 FNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 244 bits (622), Expect = 2e-64
Identities = 118/170 (69%), Positives = 137/170 (80%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELN
Sbjct: 164 DHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELN 223
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS D
Sbjct: 224 GKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCD 283
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F D +SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 243 bits (619), Expect = 4e-64
Identities = 118/170 (69%), Positives = 136/170 (80%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELN
Sbjct: 153 DHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELN 212
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP P+VSVVDLTC+L+K AKYDEIK +K ASE +KGIL YTE++VVS D
Sbjct: 213 GKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCD 272
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F D +SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 273 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 242 bits (617), Expect = 6e-64
Identities = 118/170 (69%), Positives = 138/170 (81%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELN
Sbjct: 164 DNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELN 223
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP P+VSVVDLTC+L+K AKYD+IK +K A++ +KGILAYTE++VVS D
Sbjct: 224 GKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCD 283
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F GD +SS FDA AGI L D FVKLV+WYDNEYGYS RV+DL+ HM++K+
Sbjct: 284 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 241 bits (616), Expect = 8e-64
Identities = 117/170 (68%), Positives = 136/170 (80%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELN
Sbjct: 164 DHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELN 223
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP P+VSVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS D
Sbjct: 224 GKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCD 283
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F D +SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
surface antigen) (P-37)
Length = 338
Score = 241 bits (615), Expect = 1e-63
Identities = 118/171 (69%), Positives = 133/171 (77%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
D F I EGLMTT+H++TATQK VDGPSSKLWRDGRGA QNIIP IP LN
Sbjct: 167 DKFEIVEGLMTTVHSFTATQKVVDGPSSKLWRDGRGAMQNIIPASTGAAKAVGKVIPALN 226
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP PDVSVVDLTC+L K A Y+EIKAA+K A+ +KGIL YTE+EVVS D
Sbjct: 227 GKLTGMAFRVPTPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSD 286
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKDH 513
F G +SSIFDAKAGI L + FVKLV+WYDNE+GYSCRV+DLI HM DH
Sbjct: 287 FVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHKVDH 337
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 241 bits (614), Expect = 1e-63
Identities = 117/170 (68%), Positives = 137/170 (80%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELN
Sbjct: 164 DNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELN 223
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP P+VSVVDLTC+L+K AKYD+IK +K A+E +KGIL YTE++VVS D
Sbjct: 224 GKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCD 283
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F GD +SS FDA AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 284 FNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 240 bits (613), Expect = 2e-63
Identities = 117/170 (68%), Positives = 136/170 (80%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELN
Sbjct: 164 DHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELN 223
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS D
Sbjct: 224 GKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCD 283
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F +SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 284 FNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 240 bits (613), Expect = 2e-63
Identities = 116/170 (68%), Positives = 137/170 (80%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
DHFGI EGLMTT+HA TATQKTVDGPS K+WRDGRGAAQNIIP IPELN
Sbjct: 164 DHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELN 223
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS D
Sbjct: 224 GKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCD 283
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F D +SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ +M++K+
Sbjct: 284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333
>sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 334
Score = 239 bits (610), Expect = 4e-63
Identities = 115/170 (67%), Positives = 137/170 (80%)
Frame = +1
Query: 1 DHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELN 180
DHFGI EGLMTT+HA TATQKTVD PS KLWR GRGAAQN+IP IPEL+
Sbjct: 165 DHFGIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELD 224
Query: 181 GKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQD 360
GK+TGMAFRVP +VSV+DLTC+L+K AKYD+IK +K ASE +KGIL YTE+EVVS D
Sbjct: 225 GKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSDD 284
Query: 361 FKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 510
F G ++SSIFDA AGI+L DTFVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 285 FNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFGYSERVVDLMAHMASKE 334
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,519,658
Number of Sequences: 369166
Number of extensions: 1254527
Number of successful extensions: 3384
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3254
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)