Planarian EST Database

Dr_sW_021_M18

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_021_M18
         (454 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10435|YDE1_SCHPO  Probable ubiquitin fusion degradation ...    28   7.2  

>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c
          Length = 1647

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -2

Query: 198  LIALKHLRLHFLLENVQNSI*QSFPNLLDFYQQ---LLTMKNLHFGFFH*LIMVKPKRIY 28
            L+ LK L  H L E  Q+   +SF  L   +Q+   + + + LH G  H L++   K   
Sbjct: 858  LVQLKQLSKHLLSETKQD---ESFSELAKIFQEGSNITSHELLHSGLIHNLLLSLKKFGS 914

Query: 27   LSHKTKLLA 1
             S +T LLA
Sbjct: 915  SSLRTFLLA 923

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,553,895
Number of Sequences: 369166
Number of extensions: 473143
Number of successful extensions: 1272
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)