Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_M17
(833 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9HC21|DNC_HUMAN Mitochondrial deoxynucleotide carrier (... 86 2e-16
sp|Q5IS35|DNC_MACFA Mitochondrial deoxynucleotide carrier (... 85 2e-16
sp|Q5NVC1|DNC_PONPY Mitochondrial deoxynucleotide carrier (... 85 2e-16
sp|Q9DAM5|DNC_MOUSE Mitochondrial deoxynucleotide carrier (... 79 2e-14
sp|P38702|LEU5_YEAST Mitochondrial carrier protein LEU5 54 5e-07
sp|P39953|YEA6_YEAST Putative mitochondrial carrier YEL006W 50 1e-05
sp|P33303|SFC1_YEAST Succinate/fumarate mitochondrial trans... 49 1e-05
sp|P40556|YIA6_YEAST Putative mitochondrial carrier YIL006W 49 1e-05
sp|O13805|YE08_SCHPO Putative mitochondrial carrier C17H9.08 49 2e-05
sp|P18238|ADT3_YEAST ADP,ATP carrier protein 3 (ADP/ATP tra... 49 2e-05
>sp|Q9HC21|DNC_HUMAN Mitochondrial deoxynucleotide carrier (Solute carrier family 25,
member 19) (Mitochondrial uncoupling protein 1)
Length = 320
Score = 85.5 bits (210), Expect = 2e-16
Identities = 42/92 (45%), Positives = 59/92 (64%)
Frame = +1
Query: 139 LQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVE 318
LQ+ L G AG ++K YP+D+ KKR+QV GFE AR+ FG++ KG++ C K + E
Sbjct: 217 LQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKE 276
Query: 319 GMGGYFKGLKTSVIKSFISIGLRFSVYEQVCN 414
G G+FKGL S++K+ +S G F YE CN
Sbjct: 277 GALGFFKGLSPSLLKAALSTGFMFFSYEFFCN 308
Score = 46.6 bits (109), Expect = 8e-05
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +3
Query: 30 FILGSLAGSTATIFTQPFDVFRTRFAAQGEPKTY 131
F+ G LA AT+ P DV RTRFAAQGEPK Y
Sbjct: 122 FVCGGLAACMATLTVHPVDVLRTRFAAQGEPKVY 155
Score = 43.1 bits (100), Expect = 0.001
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +1
Query: 157 GGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVEGMGGYF 336
GG+A MA + V+PVD+++ R Q G+ V + V ++ EG ++
Sbjct: 125 GGLAACMATLTVHPVDVLRTRFAAQ---------GEPKVYNTLRHAVGTMYRSEGPQVFY 175
Query: 337 KGLKTSVIKSFISIGLRFSVYEQV 408
KGL ++I F GL+FS Y +
Sbjct: 176 KGLAPTLIAIFPYAGLQFSCYSSL 199
Score = 37.4 bits (85), Expect = 0.051
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +1
Query: 142 QSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARS-KFGKLHVSKGVIKCVKVIFLVE 318
Q A++G ++G + + + P D+IK R Q+Q ++RS K H G+++ + I E
Sbjct: 17 QVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYH---GILQASRQILQEE 73
Query: 319 GMGGYFKGLKTSVIKSFISIGLRFSVYEQV 408
G ++KG + I S ++F +E +
Sbjct: 74 GPTAFWKGHVPAQILSIGYGAVQFLSFEML 103
>sp|Q5IS35|DNC_MACFA Mitochondrial deoxynucleotide carrier (Solute carrier family 25,
member 19)
Length = 320
Score = 85.1 bits (209), Expect = 2e-16
Identities = 42/92 (45%), Positives = 59/92 (64%)
Frame = +1
Query: 139 LQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVE 318
LQ+ L G AG ++K YP+D+ KKR+QV GFE AR+ FG++ KG++ C K + E
Sbjct: 217 LQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKE 276
Query: 319 GMGGYFKGLKTSVIKSFISIGLRFSVYEQVCN 414
G G+FKGL S++K+ +S G F YE CN
Sbjct: 277 GALGFFKGLSPSLLKAALSTGFMFFWYEFFCN 308
Score = 48.9 bits (115), Expect = 2e-05
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +3
Query: 30 FILGSLAGSTATIFTQPFDVFRTRFAAQGEPKTY 131
F+ G LA TAT+ P DV RTRFAAQGEPK Y
Sbjct: 122 FVCGGLAACTATLTVHPVDVLRTRFAAQGEPKVY 155
Score = 40.8 bits (94), Expect = 0.005
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = +1
Query: 157 GGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVEGMGGYF 336
GG+A A + V+PVD+++ R Q G+ V + V ++ EG ++
Sbjct: 125 GGLAACTATLTVHPVDVLRTRFAAQ---------GEPKVYNTLRHAVGTMYRSEGPQVFY 175
Query: 337 KGLKTSVIKSFISIGLRFSVYEQV 408
KGL ++I F GL+FS Y +
Sbjct: 176 KGLAPTLIAIFPYAGLQFSCYSSL 199
Score = 37.4 bits (85), Expect = 0.051
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +1
Query: 139 LQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVA-RSKFGKLHVSKGVIKCVKVIFLV 315
LQ A++G ++G + + + P D+IK R Q+Q ++ R K H G+ + + I
Sbjct: 16 LQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRRDPNAKYH---GIFQASRQILQE 72
Query: 316 EGMGGYFKGLKTSVIKSFISIGLRFSVYEQV 408
EG+ ++KG + I S ++F +E +
Sbjct: 73 EGLTAFWKGHIPAQILSIGYGAVQFLSFEML 103
>sp|Q5NVC1|DNC_PONPY Mitochondrial deoxynucleotide carrier (Solute carrier family 25,
member 19)
Length = 320
Score = 85.1 bits (209), Expect = 2e-16
Identities = 42/92 (45%), Positives = 59/92 (64%)
Frame = +1
Query: 139 LQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVE 318
LQ+ L G AG ++K YP+D+ KKR+QV GFE AR+ FG++ KG++ C K + E
Sbjct: 217 LQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKE 276
Query: 319 GMGGYFKGLKTSVIKSFISIGLRFSVYEQVCN 414
G G+FKGL S++K+ +S G F YE CN
Sbjct: 277 GALGFFKGLSPSLLKAALSTGFMFFWYEFFCN 308
Score = 46.6 bits (109), Expect = 8e-05
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +3
Query: 30 FILGSLAGSTATIFTQPFDVFRTRFAAQGEPKTY 131
F+ G LA AT+ P DV RTRFAAQGEPK Y
Sbjct: 122 FVCGGLAACMATLTVHPVDVLRTRFAAQGEPKVY 155
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +1
Query: 157 GGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVEGMGGYF 336
GG+A MA + V+PVD+++ R Q G+ V + V ++ EG ++
Sbjct: 125 GGLAACMATLTVHPVDVLRTRFAAQ---------GEPKVYNTLCHAVGTMYRSEGPQVFY 175
Query: 337 KGLKTSVIKSFISIGLRFSVYEQV 408
KGL ++I F GL+FS Y +
Sbjct: 176 KGLAPTLIAIFPYAGLQFSCYSSL 199
Score = 36.6 bits (83), Expect = 0.088
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +1
Query: 142 QSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARS-KFGKLHVSKGVIKCVKVIFLVE 318
Q A++G ++G + + + P D+IK R Q+Q ++RS K H G+++ + I E
Sbjct: 17 QVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPNAKYH---GILQASRQILQEE 73
Query: 319 GMGGYFKGLKTSVIKSFISIGLRFSVYEQV 408
G ++KG + I S ++F +E +
Sbjct: 74 GPTAFWKGHIPAQILSIGYGAVQFLSFEML 103
>sp|Q9DAM5|DNC_MOUSE Mitochondrial deoxynucleotide carrier (Solute carrier family 25
member 19)
Length = 318
Score = 79.0 bits (193), Expect = 2e-14
Identities = 40/98 (40%), Positives = 61/98 (62%)
Frame = +1
Query: 139 LQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVE 318
L++ L G +G ++K YP+D+IKKR+QV GFE ARS FG++ +G++ + + E
Sbjct: 217 LKNLLCGCGSGVISKTFTYPLDLIKKRLQVGGFEHARSAFGQVRSYRGLLDLTQQVLQEE 276
Query: 319 GMGGYFKGLKTSVIKSFISIGLRFSVYEQVCNSILTLR 432
G G+FKGL S++K+ +S G F YE CN +R
Sbjct: 277 GTRGFFKGLSPSLMKAALSTGFMFFWYELFCNLFHCIR 314
Score = 45.8 bits (107), Expect = 1e-04
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +3
Query: 21 SKTFILGSLAGSTATIFTQPFDVFRTRFAAQGEPKTY 131
S F+ G L+ TAT+ P DV RTR AAQGEPK Y
Sbjct: 119 SAHFVCGGLSAGTATLTVHPVDVLRTRLAAQGEPKIY 155
Score = 44.7 bits (104), Expect = 3e-04
Identities = 23/84 (27%), Positives = 44/84 (52%)
Frame = +1
Query: 157 GGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVEGMGGYF 336
GG++ A + V+PVD+++ R+ Q G+ + + + ++ ++ EG ++
Sbjct: 125 GGLSAGTATLTVHPVDVLRTRLAAQ---------GEPKIYNNLREAIRTMYKTEGPFVFY 175
Query: 337 KGLKTSVIKSFISIGLRFSVYEQV 408
KGL +VI F GL+FS Y +
Sbjct: 176 KGLTPTVIAIFPYAGLQFSCYRSL 199
Score = 37.0 bits (84), Expect = 0.067
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +1
Query: 139 LQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARS-KFGKLHVSKGVIKCVKVIFLV 315
L+ A++G ++G + + + P+D+IK R Q+Q + S K H G+ + K I
Sbjct: 16 LEVAVAGSVSGFVTRALISPLDVIKIRFQLQIERLCPSDPNAKYH---GIFQAAKQILQE 72
Query: 316 EGMGGYFKGLKTSVIKSFISIGLRFSVYEQV 408
EG ++KG + I S ++F +E++
Sbjct: 73 EGPRAFWKGHVPAQILSIGYGAVQFLAFEEL 103
>sp|P38702|LEU5_YEAST Mitochondrial carrier protein LEU5
Length = 357
Score = 53.9 bits (128), Expect = 5e-07
Identities = 28/100 (28%), Positives = 57/100 (57%)
Frame = +1
Query: 136 ILQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLV 315
I++S L+GGI+GS AK + P+D IK Q + + G+++ K I++
Sbjct: 33 IVRSGLAGGISGSCAKTLIAPLDRIKILFQTSNPHYTKYTGSLI----GLVEAAKHIWIN 88
Query: 316 EGMGGYFKGLKTSVIKSFISIGLRFSVYEQVCNSILTLRD 435
+G+ G+F+G ++++ F ++F YEQ+ N+++ ++
Sbjct: 89 DGVRGFFQGHSATLLRIFPYAAVKFVAYEQIRNTLIPSKE 128
Score = 50.4 bits (119), Expect = 6e-06
Identities = 30/105 (28%), Positives = 51/105 (48%)
Frame = +1
Query: 94 ELVLQPRVNQKLIRILQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHV 273
EL + ++ +R +SGG+AG ++ YP +II++R+QV K H
Sbjct: 250 ELERVQKKQRRPLRTWAELISGGLAGMASQTAAYPFEIIRRRLQVSALS---PKTMYDHK 306
Query: 274 SKGVIKCVKVIFLVEGMGGYFKGLKTSVIKSFISIGLRFSVYEQV 408
+ + + +IF G+ G+F GL IK + F VYE++
Sbjct: 307 FQSISEIAHIIFKERGVRGFFVGLSIGYIKVTPMVACSFFVYERM 351
>sp|P39953|YEA6_YEAST Putative mitochondrial carrier YEL006W
Length = 335
Score = 49.7 bits (117), Expect = 1e-05
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +1
Query: 145 SALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVS---KGVIKCVKVIFLV 315
+A+SG ++G+++ + V P D+ K R+Q QG + H S KG IF
Sbjct: 41 AAISGALSGALSAMLVCPFDVAKTRLQAQGLQ------NMTHQSQHYKGFFGTFATIFKD 94
Query: 316 EGMGGYFKGLKTSVIKSFISIGLRFSVYE 402
EG G +KGL+ +V+ ++ + FSVY+
Sbjct: 95 EGAAGLYKGLQPTVLGYIPTLMIYFSVYD 123
Score = 33.1 bits (74), Expect = 0.97
Identities = 22/82 (26%), Positives = 46/82 (56%)
Frame = +1
Query: 121 QKLIRILQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVK 300
QKLI L S LS +A ++ YP +I++ RMQ++ ++ + V + ++ +K
Sbjct: 244 QKLI--LASMLSKMVASTVT----YPHEILRTRMQLKS-DLPNT------VQRHLLPLIK 290
Query: 301 VIFLVEGMGGYFKGLKTSVIKS 366
+ + EG G++ G T+++++
Sbjct: 291 ITYRQEGFAGFYSGFATNLVRT 312
Score = 30.0 bits (66), Expect = 8.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 33 ILGSLAGSTATIFTQPFDVFRTRFAAQG 116
I G+L+G+ + + PFDV +TR AQG
Sbjct: 43 ISGALSGALSAMLVCPFDVAKTRLQAQG 70
>sp|P33303|SFC1_YEAST Succinate/fumarate mitochondrial transporter (Regulator of
acetyl-CoA synthetase activity)
Length = 322
Score = 49.3 bits (116), Expect = 1e-05
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 151 LSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVS-KGVIKCVKVIFLVEGMG 327
++GG AG +C +P+D IK RMQ+ R G HV G IK + I+ EG
Sbjct: 15 MAGGTAGLFEALCCHPLDTIKVRMQIY-----RRVAGIEHVKPPGFIKTGRTIYQKEGFL 69
Query: 328 GYFKGLKTSVIKSFISIGLRFSVYE 402
+KGL VI + +RFS YE
Sbjct: 70 ALYKGLGAVVIGIIPKMAIRFSSYE 94
Score = 31.2 bits (69), Expect = 3.7
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = +1
Query: 178 AKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVEGMGGYFKGLKTSV 357
A + V P++++K R+Q Q + G + I I EG+ ++G+ +
Sbjct: 125 AVLVVNPMEVVKIRLQAQHLTPSEPNAGPKY--NNAIHAAYTIVKEEGVSALYRGVSLTA 182
Query: 358 IKSFISIGLRFSVYEQV 408
+ + G F+VY ++
Sbjct: 183 ARQATNQGANFTVYSKL 199
Score = 30.8 bits (68), Expect = 4.8
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 142 QSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKV---IFL 312
+++ G I+G++ P+D IK R+Q + K L G+ K + + +
Sbjct: 216 ETSCIGLISGAIGPFSNAPLDTIKTRLQ-------KDKSISLEKQSGMKKIITIGAQLLK 268
Query: 313 VEGMGGYFKGLKTSVIKSFISIGLRFSVYEQV 408
EG +KG+ V++ + F+VYE V
Sbjct: 269 EEGFRALYKGITPRVMRVAPGQAVTFTVYEYV 300
>sp|P40556|YIA6_YEAST Putative mitochondrial carrier YIL006W
Length = 373
Score = 49.3 bits (116), Expect = 1e-05
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = +1
Query: 145 SALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVEGM 324
+ALSG AG ++ + V P+D+ K R+Q QG + ++F + +G++ + I EG
Sbjct: 80 TALSGAFAGFLSGVAVCPLDVAKTRLQAQGLQ---TRFENPYY-RGIMGTLSTIVRDEGP 135
Query: 325 GGYFKGLKTSVIKSFISIGLRFSVYE 402
G +KGL V+ F + + FSVYE
Sbjct: 136 RGLYKGLVPIVLGYFPTWMIYFSVYE 161
Score = 35.0 bits (79), Expect = 0.25
Identities = 18/101 (17%), Positives = 49/101 (48%)
Frame = +1
Query: 118 NQKLIRILQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCV 297
N I + + ++ ++ +A YP +I++ RMQ++ ++ S + + + +
Sbjct: 272 NTNSINLQRLIMASSVSKMIASAVTYPHEILRTRMQLKS-DIPDS------IQRRLFPLI 324
Query: 298 KVIFLVEGMGGYFKGLKTSVIKSFISIGLRFSVYEQVCNSI 420
K + EG+ G++ G T+++++ + + +E N +
Sbjct: 325 KATYAQEGLKGFYSGFTTNLVRTIPASAITLVSFEYFRNRL 365
>sp|O13805|YE08_SCHPO Putative mitochondrial carrier C17H9.08
Length = 326
Score = 48.9 bits (115), Expect = 2e-05
Identities = 29/91 (31%), Positives = 49/91 (53%)
Frame = +1
Query: 136 ILQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLV 315
+++S ++GG AG +AK V P+D +K Q S G + G+ K +K I+ V
Sbjct: 17 LVKSGIAGGTAGCVAKSVVAPLDRVKILYQTN----HASYRGYAYSRHGLYKAIKHIYHV 72
Query: 316 EGMGGYFKGLKTSVIKSFISIGLRFSVYEQV 408
G+ G ++G ++ + F G++F YEQV
Sbjct: 73 YGLHGLYQGHTATLYRVFPYAGIKFVAYEQV 103
Score = 37.7 bits (86), Expect = 0.039
Identities = 25/94 (26%), Positives = 42/94 (44%)
Frame = +1
Query: 118 NQKLIRILQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCV 297
+ K ++ L G AG + YP ++ +++MQ+ G +S F +L + V
Sbjct: 230 SDKKLKTWPELLCGAFAGVCGQTVSYPFEVCRRKMQIGGIRKNKS-FLRLK------QVV 282
Query: 298 KVIFLVEGMGGYFKGLKTSVIKSFISIGLRFSVY 399
+ + GM G+F GL IK + F VY
Sbjct: 283 QTTYKEAGMRGFFVGLTIGYIKVIPMVSTSFFVY 316
>sp|P18238|ADT3_YEAST ADP,ATP carrier protein 3 (ADP/ATP translocase 3) (Adenine
nucleotide translocator 3) (ANT 3)
Length = 307
Score = 48.5 bits (114), Expect = 2e-05
Identities = 27/90 (30%), Positives = 46/90 (51%)
Frame = +1
Query: 139 LQSALSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVE 318
L S L G + + A C YP+D +++RM + + + G I C+K I E
Sbjct: 217 LASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAVKYN--------GAIDCLKKIVASE 268
Query: 319 GMGGYFKGLKTSVIKSFISIGLRFSVYEQV 408
G+G FKG ++++S G+ S+Y+Q+
Sbjct: 269 GVGSLFKGCGANILRSVAGAGV-ISMYDQL 297
Score = 38.9 bits (89), Expect = 0.018
Identities = 21/86 (24%), Positives = 45/86 (52%)
Frame = +1
Query: 151 LSGGIAGSMAKICVYPVDIIKKRMQVQGFEVARSKFGKLHVSKGVIKCVKVIFLVEGMGG 330
L GG++ ++AK P++ +K +Q Q + + K + G++ C K EG+
Sbjct: 17 LMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKY--SGIVDCFKRTAKQEGLIS 74
Query: 331 YFKGLKTSVIKSFISIGLRFSVYEQV 408
+++G +VI+ F + L F+ +++
Sbjct: 75 FWRGNTANVIRYFPTQALNFAFKDKI 100
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,138,685
Number of Sequences: 369166
Number of extensions: 1546999
Number of successful extensions: 3822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3711
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)