Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_M13-1
(347 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41902|CRS5_YEAST Metallothionein-like protein CRS5 41 0.001
sp|P55953|MT_STENE Metallothionein (MT) 39 0.004
sp|Q26496|MTB_SPHGR Metallothionein-B (MTB) 38 0.006
sp|Q26497|MTA_SPHGR Metallothionein-A (MTA) 38 0.006
sp|O02033|MT_LYTPI Metallothionein (MT) (LpMT1) 38 0.008
sp|P80248|MT13_MYTED Metallothionein 10-III (MT-10-III) 37 0.014
sp|P04734|MTA_STRPU Metallothionein-A (MTA) 37 0.014
sp|P23038|MT_CRAVI Metallothionein (MT) 37 0.018
sp|P80289|MT2B_RABIT Metallothionein-2B (MT-2B) (Metallothi... 37 0.018
sp|P80246|MT10A_MYTED Metallothionein 10-Ia (MT-10-Ia) 37 0.018
>sp|P41902|CRS5_YEAST Metallothionein-like protein CRS5
Length = 69
Score = 40.8 bits (94), Expect = 0.001
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 328 SENCKCC-EGCKSNKECTCEGGKCNCDEC 245
S CK C E CK CTCE KCNC++C
Sbjct: 41 SPQCKSCGEKCKCETTCTCEKSKCNCEKC 69
>sp|P55953|MT_STENE Metallothionein (MT)
Length = 64
Score = 38.9 bits (89), Expect = 0.004
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 310 CEGCKSNKECTCEGGK-CNCDECLK-FACSGNXXXXXXXXXXXXXXXKEGKGCQCSDGVC 137
C CK KEC C+G + C EC K C G G GC C++G C
Sbjct: 6 CVCCKEGKECACKGKECCTTGECCKDGTCCGKCTNAACKCADGCKC---GSGCSCTEGNC 62
Query: 136 KC 131
C
Sbjct: 63 AC 64
Score = 37.7 bits (86), Expect = 0.008
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 334 CQSENCKCCEGCKSNKECTCEGGKCNC 254
C + CKC +GCK C+C G C C
Sbjct: 38 CTNAACKCADGCKCGSGCSCTEGNCAC 64
>sp|Q26496|MTB_SPHGR Metallothionein-B (MTB)
Length = 67
Score = 38.1 bits (87), Expect = 0.006
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 334 CQSENCKCCEGCKSNKECTCEGGKCNC 254
C + CKC +GCK C+C G C C
Sbjct: 41 CSNAACKCADGCKCGSGCSCTLGNCTC 67
Score = 33.1 bits (74), Expect = 0.20
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Frame = -2
Query: 310 CEGCKSNKECTCEGGKC-------------NCDECLKFACSGNXXXXXXXXXXXXXXXKE 170
C C+ +EC C+GG+C C +C AC K
Sbjct: 7 CVCCQDGEECPCKGGECCITGTCCKEGDGLCCGKCSNAACK------------CADGCKC 54
Query: 169 GKGCQCSDGVCKC 131
G GC C+ G C C
Sbjct: 55 GSGCSCTLGNCTC 67
>sp|Q26497|MTA_SPHGR Metallothionein-A (MTA)
Length = 67
Score = 38.1 bits (87), Expect = 0.006
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 334 CQSENCKCCEGCKSNKECTCEGGKCNC 254
C + CKC +GCK C+C G C C
Sbjct: 41 CSNAACKCADGCKCGSGCSCTLGNCTC 67
Score = 34.7 bits (78), Expect = 0.070
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -2
Query: 310 CEGCKSNKECTCEGGKCNCDECLKFACSGNXXXXXXXXXXXXXXXKEGKGCQCSDGVCKC 131
C C+ KEC C+GG+C C+ +C C+C+DG CKC
Sbjct: 7 CVCCQDGKECPCKGGEC----CITGSC-------CKEGDGLCCGKCSNAACKCADG-CKC 54
>sp|O02033|MT_LYTPI Metallothionein (MT) (LpMT1)
Length = 68
Score = 37.7 bits (86), Expect = 0.008
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 334 CQSENCKCCEGCKSNKECTCEGGKCNC 254
C + CKC +GCK C C G C C
Sbjct: 42 CSNAACKCADGCKCEGACACTMGNCTC 68
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = -2
Query: 310 CEGCKSNKECTCEGGKCNCDECLKFACSGNXXXXXXXXXXXXXXXKEGKGCQCSDGVCKC 131
C C+ KEC C GG+C C+ C C+C+DG CKC
Sbjct: 8 CFCCRDGKECACGGGEC----CITGKC-------CKEGDRTCCGKCSNAACKCADG-CKC 55
Query: 130 K 128
+
Sbjct: 56 E 56
>sp|P80248|MT13_MYTED Metallothionein 10-III (MT-10-III)
Length = 73
Score = 37.0 bits (84), Expect = 0.014
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Frame = -2
Query: 340 SCCQSENCKC---C--EGCKSNKECTCEGGKCNCDEC-LKFACSGNXXXXXXXXXXXXXX 179
+C +S C C C EGC+ C C G C C C + CSG+
Sbjct: 6 NCIESNVCICGTGCSGEGCRCGDACKCSGADCKCSGCKVVCKCSGSCACEAGCTGP---- 61
Query: 178 XKEGKGCQCSDGVCKCK 128
C+C+ G C CK
Sbjct: 62 ----STCRCAPG-CSCK 73
>sp|P04734|MTA_STRPU Metallothionein-A (MTA)
Length = 64
Score = 37.0 bits (84), Expect = 0.014
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 334 CQSENCKCCEGCKSNKECTCEGGKCNC 254
C + CKC GCK C+C G C C
Sbjct: 38 CTNAACKCANGCKCGSGCSCTEGNCAC 64
Score = 35.4 bits (80), Expect = 0.041
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = -2
Query: 310 CEGCKSNKECTCEGGK-CNCDECLK-FACSGNXXXXXXXXXXXXXXXKEGKGCQCSDGVC 137
C CK KEC C G C EC K C G G GC C++G C
Sbjct: 6 CVCCKEGKECACFGQDCCKTGECCKDGTCCGICTNAACKCANGCKC---GSGCSCTEGNC 62
Query: 136 KC 131
C
Sbjct: 63 AC 64
>sp|P23038|MT_CRAVI Metallothionein (MT)
Length = 75
Score = 36.6 bits (83), Expect = 0.018
Identities = 18/61 (29%), Positives = 22/61 (36%)
Frame = -2
Query: 334 CQSENCKCCEGCKSNKECTCEGGKCNCDECLKFACSGNXXXXXXXXXXXXXXXKEGKGCQ 155
C + CKC GCK +C C G K C +C+ K G GC
Sbjct: 19 CPATGCKCGPGCKCGDDCKCAGCKVKC------SCTSEGGCKCGEKCTGPATCKCGSGCS 72
Query: 154 C 152
C
Sbjct: 73 C 73
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 340 SCCQSENCKCCEGCKSNKECTCEGGKCNC 254
SC CKC E C C C G C+C
Sbjct: 46 SCTSEGGCKCGEKCTGPATCKC-GSGCSC 73
>sp|P80289|MT2B_RABIT Metallothionein-2B (MT-2B) (Metallothionein-IIB) (MT-IIB)
Length = 61
Score = 36.6 bits (83), Expect = 0.018
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 346 NKSCCQSENCKCCEGCKSNKECTCEGGKCNCDECLKFACS 227
N SC ++C C CK KEC C K +C C C+
Sbjct: 4 NCSCATGDSCTCASSCKC-KECKCTSCKKSCCSCCPAGCT 42
>sp|P80246|MT10A_MYTED Metallothionein 10-Ia (MT-10-Ia)
Length = 73
Score = 36.6 bits (83), Expect = 0.018
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Frame = -2
Query: 340 SCCQSENCKC---C--EGCKSNKECTCEGGKCNCDEC-LKFACSGNXXXXXXXXXXXXXX 179
+C ++ C C C EGC+ C C G C C C + CSG
Sbjct: 6 NCIETNVCICDTGCSGEGCRCGDACKCSGADCKCSGCKVVCKCSGRCEC----------- 54
Query: 178 XKEGKG------CQCSDGVCKCK 128
GKG C+C+ G C CK
Sbjct: 55 ---GKGCTGPSTCKCAPG-CSCK 73
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,875,471
Number of Sequences: 369166
Number of extensions: 331022
Number of successful extensions: 2805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2584
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)