Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_M12
(822 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another... 50 7e-06
sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another... 47 8e-05
sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346 47 8e-05
sp|Q96PM9|ZN385_HUMAN Zinc finger protein 385 (Hematopoieti... 43 0.001
sp|Q569K4|ZN533_HUMAN Zinc finger protein 533 40 0.006
sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533 40 0.008
sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding pr... 38 0.038
sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding pr... 38 0.038
sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533 37 0.050
sp|P10583|GLNA_AZOBR Glutamine synthetase (Glutamate--ammon... 37 0.050
>sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 50.1 bits (118), Expect = 7e-06
Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Frame = +1
Query: 163 CRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTK-----DDLRCDVCRIVGE 327
C IC FSS V A HY GK H K + V+ + D C +C
Sbjct: 136 CPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHATFN 195
Query: 328 STVQMETHYAGKKH-----QLKMKAFLERVNAGAIAPPMSSRGF-CD-----FNNVEREE 474
V + HY GKKH +LK+ A R+ A+ + +G+ C N++E+ +
Sbjct: 196 DPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCKIVLNSIEQYQ 255
Query: 475 ANPVDPTRFIQENILPKNLTGSFLNQPDPEPP 570
A+ + F +N PK + S P P
Sbjct: 256 AH---VSGFKHKNQSPKTVASSLGQIPMQRQP 284
Score = 46.6 bits (109), Expect = 8e-05
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 157 EFCRICESPFSSKVAALQHYSGKKHKK-------IAENWSSYNP-VKPIDTKDDLRCDVC 312
+FC +C + F+ V A QHY GKKH+K +A +P V C C
Sbjct: 185 KFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTC 244
Query: 313 RIVGESTVQMETHYAGKKHQ 372
+IV S Q + H +G KH+
Sbjct: 245 KIVLNSIEQYQAHVSGFKHK 264
Score = 37.4 bits (85), Expect = 0.050
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Frame = +1
Query: 163 CRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPID--------------TKDDLR 300
C++C + S+ L HY KKH + + + + ++ + +KD +
Sbjct: 75 CKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQ 134
Query: 301 -CDVCRIVGESTVQMETHYAGKKH--QLKMKAFLERVNA 408
C +C + S V ++HY GK H LK+K +V A
Sbjct: 135 CCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEA 173
>sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 46.6 bits (109), Expect = 8e-05
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 157 EFCRICESPFSSKVAALQHYSGKKHKK-------IAENWSSYNP-VKPIDTKDDLRCDVC 312
+FC +C S F+ A QHY GK+H+K +A +P V + C C
Sbjct: 185 KFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYPCKTC 244
Query: 313 RIVGESTVQMETHYAGKKHQ 372
+IV S Q + H +G KH+
Sbjct: 245 KIVLNSIEQYQAHVSGFKHK 264
Score = 43.9 bits (102), Expect = 5e-04
Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 35/170 (20%)
Frame = +1
Query: 127 INEDVHRLDLE-----------FCRICESPFSSKVAALQHYSGKKHKK------------ 237
I DV RLD + C IC FSS A HY GK H K
Sbjct: 113 IKGDVKRLDSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGA 172
Query: 238 -IAENWSSYNPVKPIDTKDDLRCDVCRIVGESTVQMETHYAGKKH-----QLKMKAFLER 399
+ +N +P D C +C + HY GK+H +LK+ A R
Sbjct: 173 ALQQNREMLDP--------DKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGR 224
Query: 400 VNAGAIAPPMSSRGF-CD-----FNNVEREEANPVDPTRFIQENILPKNL 531
+ A++ + +G+ C N++E+ +A+ + F +N PK L
Sbjct: 225 LADPAVSDLPAGKGYPCKTCKIVLNSIEQYQAH---VSGFKHKNQSPKTL 271
Score = 37.0 bits (84), Expect = 0.066
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Frame = +1
Query: 163 CRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTKDDLR-------------- 300
C++C + S+ L HY KKH + + + + ++ I K D++
Sbjct: 75 CKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETI--KGDVKRLDSDQKSSRSKDK 132
Query: 301 ---CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAI 417
C +C + S ++HY GK H +K + A+
Sbjct: 133 NHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAAL 174
>sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346
Length = 310
Score = 46.6 bits (109), Expect = 8e-05
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 157 EFCRICESPFSSKVAALQHYSGKKHKK-------IAENWSSYNP-VKPIDTKDDLRCDVC 312
+FC +C + F+ V A QHY GKKH+K +A +P V C C
Sbjct: 201 KFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTC 260
Query: 313 RIVGESTVQMETHYAGKKHQ 372
+IV S Q + H +G KH+
Sbjct: 261 KIVLNSIEQYQAHVSGFKHK 280
Score = 45.1 bits (105), Expect = 2e-04
Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 34/170 (20%)
Frame = +1
Query: 163 CRICESPFSSKVAALQHYSGKKHKK-----------------------IAENWSSYNPVK 273
C IC FSS V A HY GK H K +A + + +
Sbjct: 136 CPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALSKRLTNPFLVASTLALHQNRE 195
Query: 274 PIDTKDDLRCDVCRIVGESTVQMETHYAGKKH-----QLKMKAFLERVNAGAIAPPMSSR 438
ID D C +C V + HY GKKH +LK+ A R+ A+ + +
Sbjct: 196 MID--PDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGK 253
Query: 439 GF-CD-----FNNVEREEANPVDPTRFIQENILPKNLTGSFLNQPDPEPP 570
G+ C N++E+ +A+ + F +N PK + S P P
Sbjct: 254 GYPCKTCKIVLNSIEQYQAH---VSGFKHKNQSPKTVASSLGQIPMQRQP 300
Score = 39.3 bits (90), Expect = 0.013
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Frame = +1
Query: 163 CRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPID--------------TKDDLR 300
C++C + S+ L HY KKH + + + + ++ + +KD +
Sbjct: 75 CKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQ 134
Query: 301 -CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEA 477
C +C + S V ++HY GK H +K + A++ +++ +
Sbjct: 135 CCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALSKRLTNPFLVASTLALHQNR 194
Query: 478 NPVDPTRF 501
+DP +F
Sbjct: 195 EMIDPDKF 202
>sp|Q96PM9|ZN385_HUMAN Zinc finger protein 385 (Hematopoietic zinc finger protein)
(Retinal zinc finger protein)
Length = 366
Score = 43.1 bits (100), Expect = 0.001
Identities = 49/198 (24%), Positives = 69/198 (34%), Gaps = 14/198 (7%)
Frame = +1
Query: 4 SKEEIREIETGVSKSGEPNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESP 183
S I E GV+K GE P+ A E K+ L +C +C+
Sbjct: 142 SPPSIPETGQGVTK-GEGGTPAPASLPGGSKEEEEKAKR-----------LLYCALCKVA 189
Query: 184 FSSKVAALQHYSGKKHKKIAENWSSYNPVK------------PIDTKDD--LRCDVCRIV 321
+S H G KHK I E S P+K P D C++C +
Sbjct: 190 VNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVK 249
Query: 322 GESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRF 501
S VQ++ H + ++H R P+ SR + R F
Sbjct: 250 VNSEVQLKQHISSRRH---------RDGVAGKPNPLLSR-----HKKSRGAGELAGTLTF 295
Query: 502 IQENILPKNLTGSFLNQP 555
+E LPK+L G L P
Sbjct: 296 SKE--LPKSLAGGLLPSP 311
Score = 30.4 bits (67), Expect = 6.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 295 LRCDVCRIVGESTVQMETHYAGKKHQLKMK 384
+ C++C+I S Q E HY G +H ++K
Sbjct: 54 ISCNICQIRFNSQSQAEAHYKGNRHARRVK 83
>sp|Q569K4|ZN533_HUMAN Zinc finger protein 533
Length = 471
Score = 40.4 bits (93), Expect = 0.006
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 17/184 (9%)
Frame = +1
Query: 55 PNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHK 234
P +T+P+KS+ +V+ +E+ L +C +C+ +S H +G KHK
Sbjct: 255 PPGAATSPSKSTNGAPGTVVE----SEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHK 310
Query: 235 KIAENWSSYNPVKPID-----------------TKDDLRCDVCRIVGESTVQMETHYAGK 363
+ E + P+K C++C + S +Q++ H + +
Sbjct: 311 TMVEARNGAGPIKSYPRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSR 370
Query: 364 KHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRFIQENILPKNLTGSF 543
+H+ +RV + P S +N ++R + F ++ + P L +F
Sbjct: 371 RHK-------DRVAGKPLKPKYS-----PYNKLQRSPSILAAKLAFQKDMMKP--LAPAF 416
Query: 544 LNQP 555
L+ P
Sbjct: 417 LSSP 420
Score = 37.0 bits (84), Expect = 0.066
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 274 PIDTKDDLRCDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSS 435
P K + C+VC++ S Q E HY G KH K+KA N + P S
Sbjct: 150 PPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDS 203
Score = 35.8 bits (81), Expect = 0.15
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 163 CRICESPFSSKVAALQHYSGKKH-KKIAENWSSYNPVKPIDTKDDLR----CDVCRIVGE 327
C +C+ F+S A HY G KH KK+ ++ N K + +KD + C + I G
Sbjct: 159 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKANPSCSITPITGN 218
Query: 328 STVQME 345
++ + E
Sbjct: 219 NSDKSE 224
Score = 32.7 bits (73), Expect = 1.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 124 EINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKP 276
+++++ ++ FC +C +S A H +GK H+K + S P P
Sbjct: 23 QLSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQPPPP 73
>sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533
Length = 492
Score = 40.0 bits (92), Expect = 0.008
Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 19/196 (9%)
Frame = +1
Query: 25 IETGVSKSGEPNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESPFSSKVAA 204
+ + + +P A TAP++ S E KK L +C +C+ +S
Sbjct: 273 LAVALKNTSKPAALPTAPSEPSVESEEEKAKK-----------LLYCSLCKVAVNSLSQL 321
Query: 205 LQHYSGKKHKKIAENWSSYNPVKPID-------------------TKDDLRCDVCRIVGE 327
H +G KHK + E + P+K C++C +
Sbjct: 322 EAHNTGSKHKTMLEARNGAGPIKAYPRPGSKLKVQATQLNKGSGLQNKTFHCEICDVHVN 381
Query: 328 STVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRFIQ 507
S +Q++ H + ++H+ +RV AG P + +N +R ++ +
Sbjct: 382 SEIQLKQHISSRRHK-------DRV-AGKPTKPK----YSPYNKQQRSSSSLA--AKLAL 427
Query: 508 ENILPKNLTGSFLNQP 555
+N L K ++ +FL P
Sbjct: 428 QNDLVKPISPAFLPSP 443
Score = 35.4 bits (80), Expect = 0.19
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 274 PIDTKDDLRCDVCRIVGESTVQMETHYAGKKHQLKMKA 387
P K + C++C++ S Q E HY G KH K+KA
Sbjct: 136 PPKKKQVISCNICQLRFNSDSQAEAHYKGSKHAKKLKA 173
Score = 32.3 bits (72), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 301 CDVCRIVGESTVQMETHYAGKKHQLKMK 384
CDVC I S Q + HY GK H ++K
Sbjct: 15 CDVCNIQLHSAAQAQVHYNGKSHLKRVK 42
Score = 30.4 bits (67), Expect = 6.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 163 CRICESPFSSKVAALQHYSGKKH-KKIAENWSSYNPVKPIDTKD 291
C IC+ F+S A HY G KH KK+ S N K +D
Sbjct: 145 CNICQLRFNSDSQAEAHYKGSKHAKKLKAQESPKNKQKSAVAQD 188
>sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3703
Score = 37.7 bits (86), Expect = 0.038
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 8/135 (5%)
Frame = +1
Query: 7 KEEIREIETGVSKSGEPNAPSTAPTKSSK---VPFRELVKKFEINEDVHRLDLEFCRICE 177
KEE ++E S +G + + S +PFR+ F + + + C +C+
Sbjct: 1493 KEEESDLEDKQSPTGSDSGSVQEDSGSEPKRALPFRK-GPNFTMEKFLDPSRPYKCTVCK 1551
Query: 178 SPFSSKVAALQHYSGKKH---KKIAENWSSYNPVKPIDTKDD--LRCDVCRIVGESTVQM 342
F+ K L HY+ H K A S+ +P + D+ +C+ C + + +
Sbjct: 1552 ESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPFKCNTCNVAYSQSSTL 1611
Query: 343 ETHYAGKKHQLKMKA 387
E H HQ K +A
Sbjct: 1612 EIHMRSVLHQTKARA 1626
>sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3726
Score = 37.7 bits (86), Expect = 0.038
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 8/135 (5%)
Frame = +1
Query: 7 KEEIREIETGVSKSGEPNAPSTAPTKSSK---VPFRELVKKFEINEDVHRLDLEFCRICE 177
KEE ++E S +G + + S +PFR+ F + + + C +C+
Sbjct: 1503 KEEESDLEDKQSPTGSDSGSVQEDSGSEPKRALPFRK-GPNFTMEKFLDPSRPYKCTVCK 1561
Query: 178 SPFSSKVAALQHYSGKKH---KKIAENWSSYNPVKPIDTKDD--LRCDVCRIVGESTVQM 342
F+ K L HY+ H K A S+ +P + D+ +C+ C + + +
Sbjct: 1562 ESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPFKCNTCNVAYSQSSTL 1621
Query: 343 ETHYAGKKHQLKMKA 387
E H HQ K +A
Sbjct: 1622 EIHMRSVLHQTKARA 1636
Score = 31.2 bits (69), Expect = 3.6
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +1
Query: 187 SSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTKDDLRCDVCRIVGESTVQMETHYAGKK 366
S+ AA + I +W + +P KP TK RC+VC + H +K
Sbjct: 770 SAGAAAAAAAAAAAAANIGSSWGAPSPTKP-KTKPTWRCEVCDYETNVARNLRIHMTSEK 828
Query: 367 HQLKM 381
H M
Sbjct: 829 HMHNM 833
>sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533
Length = 482
Score = 37.4 bits (85), Expect = 0.050
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +1
Query: 124 EINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTKDDLRC 303
+ +++ ++ FC +C +S A HY GK H+K + S P P+ L
Sbjct: 23 QFSKEKKKILFSFCEVCNIQLNSAAQAQVHYDGKSHRKRVKQLSDGQPPPPVQGSVPLLA 82
Query: 304 DVCRIVG 324
C G
Sbjct: 83 GPCPCPG 89
Score = 37.4 bits (85), Expect = 0.050
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 274 PIDTKDDLRCDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSS 435
P K + C+VC++ S Q E HY G KH K+KA N + P S
Sbjct: 162 PPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVPSKDS 215
Score = 37.4 bits (85), Expect = 0.050
Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 17/159 (10%)
Frame = +1
Query: 130 NEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTKDD----- 294
+E+ L +C +C+ +S H +G KHK + E + P+K
Sbjct: 288 SEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYPRPGSRLKVQ 347
Query: 295 ------------LRCDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSSR 438
C++C + S +Q++ H + ++H+ +RV + P S
Sbjct: 348 NGSKGSGLQNKMFHCEICDVHVNSEIQLKQHISSRRHK-------DRVAGKPLKPKYS-- 398
Query: 439 GFCDFNNVEREEANPVDPTRFIQENILPKNLTGSFLNQP 555
+N ++R + + + + L K L +FL+ P
Sbjct: 399 ---PYNKLQRSPS--ILAAKLAFQKDLMKPLAPTFLSSP 432
Score = 34.3 bits (77), Expect = 0.42
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 163 CRICESPFSSKVAALQHYSGKKH-KKIAENWSSYNPVKPIDTKDDLR----CDVCRIVGE 327
C +C+ F+S A HY G KH KK+ ++ N K + +KD + C + G+
Sbjct: 171 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVPSKDSAKANPSCSIRPGTGD 230
Query: 328 STVQME 345
S+ + E
Sbjct: 231 SSDKSE 236
Score = 32.7 bits (73), Expect = 1.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 301 CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPM 429
C+VC I S Q + HY GK H+ ++K +++ G PP+
Sbjct: 36 CEVCNIQLNSAAQAQVHYDGKSHRKRVK----QLSDGQPPPPV 74
>sp|P10583|GLNA_AZOBR Glutamine synthetase (Glutamate--ammonia ligase)
Length = 468
Score = 37.4 bits (85), Expect = 0.050
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Frame = +1
Query: 100 FRELVKKFEINEDVHRLDLEFCRICESPFSS----KVAALQHYSGKKHKKIAENWSSYNP 267
F ++ K E+N+ + D E E P++S + L H G K Y P
Sbjct: 137 FDDVKFKVEMNKVSYEFDSE-----EGPYTSDKDYEDGNLGHRPGVK--------GGYFP 183
Query: 268 VKPIDTKDDLRCDVCRIVGESTVQMETHY---AGKKHQLKMK 384
V P+D+ DLR ++ ++ E V +E H+ A +H+L +K
Sbjct: 184 VAPVDSGSDLRAEMLSVLAEMGVPVEKHHHEVAASQHELGIK 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,109,259
Number of Sequences: 369166
Number of extensions: 2167047
Number of successful extensions: 5070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5010
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)