Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_M07
(721 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 35 0.26
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 35 0.26
sp|P43883|ADFP_MOUSE Adipophilin (Adipose differentiation-r... 33 1.0
sp|P19269|AMY1_DEBOC Alpha-amylase 1 precursor (1,4-alpha-D... 32 1.3
sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E precursor (... 32 1.7
sp|P55737|HSP82_ARATH Heat shock protein 81-2 (HSP81-2) 32 2.2
sp|P51818|HSP83_ARATH Heat shock protein 81-3 (HSP81-3) (HS... 32 2.2
sp|P30995|BXE_CLOBU Botulinum neurotoxin type E precursor (... 32 2.2
sp|Q9TU19|NPHP1_CANFA Nephrocystin-1 32 2.2
sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD... 32 2.2
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 34.7 bits (78), Expect = 0.26
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +2
Query: 203 KKNSGDESKTESTVMQLAQNFSNKLRVSVRAMST---VCYNHMSSGN------------K 337
KKN+ +E K +Q + L+ ++ ++ + Y + S K
Sbjct: 107 KKNNAEEMKNLVNFLQSHKKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCVKKMNMLK 166
Query: 338 ETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKV 511
E +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 167 ENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ- 224
Query: 512 EVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 619
EV V + ++D N+E + D TNDD+
Sbjct: 225 EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 260
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 34.7 bits (78), Expect = 0.26
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +2
Query: 203 KKNSGDESKTESTVMQLAQNFSNKLRVSVRAMST---VCYNHMSSGN------------K 337
KKN+ +E K +Q + L+ ++ ++ + Y + S K
Sbjct: 24 KKNNAEEMKNLVNFLQSHKKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCVKKMNMLK 83
Query: 338 ETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKV 511
E +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 84 ENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ- 141
Query: 512 EVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 619
EV V + ++D N+E + D TNDD+
Sbjct: 142 EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 177
>sp|P43883|ADFP_MOUSE Adipophilin (Adipose differentiation-related protein) (ADRP)
Length = 425
Score = 32.7 bits (73), Expect = 1.0
Identities = 31/149 (20%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Frame = +2
Query: 56 ALKEVNTILTFTLKNIEGLSNVLNSIYDQSVTKNKEWLHGYY----EEFTDEMKKNSGDE 223
+++ +++ ++ + G+ +NS D ++TK++ + Y+ EE E KK G +
Sbjct: 148 SVERTKSVVNGSINTVLGMVQFMNSGVDNAITKSEMLVDQYFPLTQEELEMEAKKVEGFD 207
Query: 224 SKTESTVMQLAQNFSNKL--RVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKS 397
+ + + ++ S KL R +A+S V ++ET+ + T H+ K+
Sbjct: 208 MVQKPSNYERLESLSTKLCSRAYHQALSRV--KEAKQKSQETIS-QLHSTVHLIEFARKN 264
Query: 398 TY------QEIRDQISIENIKWIGQNSIG 466
+ Q +D++ + ++W + SIG
Sbjct: 265 MHSANQKIQGAQDKLYVSWVEW--KRSIG 291
>sp|P19269|AMY1_DEBOC Alpha-amylase 1 precursor (1,4-alpha-D-glucan glucanohydrolase 1)
Length = 512
Score = 32.3 bits (72), Expect = 1.3
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Frame = +2
Query: 170 HGYYEEFTDEMKKNSGDESKTESTVMQLAQNFSNKLRVSVRAMSTVCYNHMS-SGNKETL 346
HGY+ + DE+ N G T + QLA ++ S+ M V YNH + +G+ ++
Sbjct: 116 HGYWMKNIDELNTNFG----TADELKQLASELHSR---SMLLMVDVVYNHYAWNGDGSSV 168
Query: 347 DLM----FNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGL 469
D FN+ + + + Y DQ ++E+ W G + L
Sbjct: 169 DYSSFTPFNQQSYFHDYCLITNY---NDQTNVEDC-WEGDTEVSL 209
>sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E precursor (BoNT/E) (Bontoxilysin E)
[Contains: Botulinum neurotoxin E light chain; Botulinum
neurotoxin E heavy chain]
Length = 1251
Score = 32.0 bits (71), Expect = 1.7
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Frame = +2
Query: 68 VNTILTFTLKNIEGLSN----VLNSIYDQSVTKNKEWLHGYYEEFTDEMKKNSGDESKTE 235
+ TIL FT+K+ G S+ V+ +I + ++++W Y ++ M K + +K +
Sbjct: 642 IPTILVFTIKSFLGSSDNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRK 701
Query: 236 STVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEIR 415
+ Q QN V A+ T+ + +S E + + NK + K E+
Sbjct: 702 EQMYQALQN-------QVNAIKTIIESKYNSYTLEEKNELTNKYD------IKQIENELN 748
Query: 416 DQISI--ENI-KWIGQNSIGLLSNIKESLSAKYKVEVGQN 526
++SI NI +++ ++SI L I + E +N
Sbjct: 749 QKVSIAMNNIDRFLTESSISYLMKIINEVKINKLREYDEN 788
>sp|P55737|HSP82_ARATH Heat shock protein 81-2 (HSP81-2)
Length = 699
Score = 31.6 bits (70), Expect = 2.2
Identities = 20/87 (22%), Positives = 42/87 (48%)
Frame = +2
Query: 14 GAVEKKEYDILYRRALKEVNTILTFTLKNIEGLSNVLNSIYDQSVTKNKEWLHGYYEEFT 193
G V+ ++ + R + N IL KN+ + L ++ + +NKE + +YE F+
Sbjct: 358 GIVDSEDLPLNISRETLQQNKILKVIRKNL--VKKCLELFFE--IAENKEDYNKFYEAFS 413
Query: 194 DEMKKNSGDESKTESTVMQLAQNFSNK 274
+K ++S+ + + +L + S K
Sbjct: 414 KNLKLGIHEDSQNRTKIAELLRYHSTK 440
>sp|P51818|HSP83_ARATH Heat shock protein 81-3 (HSP81-3) (HSP81.2)
Length = 699
Score = 31.6 bits (70), Expect = 2.2
Identities = 20/87 (22%), Positives = 42/87 (48%)
Frame = +2
Query: 14 GAVEKKEYDILYRRALKEVNTILTFTLKNIEGLSNVLNSIYDQSVTKNKEWLHGYYEEFT 193
G V+ ++ + R + N IL KN+ + L ++ + +NKE + +YE F+
Sbjct: 358 GIVDSEDLPLNISRETLQQNKILKVIRKNL--VKKCLELFFE--IAENKEDYNKFYEAFS 413
Query: 194 DEMKKNSGDESKTESTVMQLAQNFSNK 274
+K ++S+ + + +L + S K
Sbjct: 414 KNLKLGIHEDSQNRTKIAELLRYHSTK 440
>sp|P30995|BXE_CLOBU Botulinum neurotoxin type E precursor (BoNT/E) (Bontoxilysin E)
[Contains: Botulinum neurotoxin E light chain; Botulinum
neurotoxin E heavy chain]
Length = 1251
Score = 31.6 bits (70), Expect = 2.2
Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Frame = +2
Query: 68 VNTILTFTLKNIEGLSN----VLNSIYDQSVTKNKEWLHGYYEEFTDEMKKNSGDESKTE 235
+ TIL FT+K+ G S+ V+ +I + ++++W Y ++ M K + +K +
Sbjct: 642 IPTILVFTIKSFLGSSDNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRK 701
Query: 236 STVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEIR 415
+ Q QN N L+ + + YN + K L ++ E I + L++
Sbjct: 702 EQMYQALQNQVNALKAIIESK----YNSYTLEEKNELTNKYD-IEQIENELNQKV----- 751
Query: 416 DQISIENI-KWIGQNSIGLLSNIKESLSAKYKVEVGQN 526
I++ NI +++ ++SI L + + E +N
Sbjct: 752 -SIAMNNIDRFLTESSISYLMKLINEVKINKLREYDEN 788
>sp|Q9TU19|NPHP1_CANFA Nephrocystin-1
Length = 565
Score = 31.6 bits (70), Expect = 2.2
Identities = 30/125 (24%), Positives = 49/125 (39%)
Frame = +2
Query: 182 EEFTDEMKKNSGDESKTESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFN 361
EE +E ++ G+E ++E + +N S+ S ++ + +G DL F
Sbjct: 8 EEEEEESEEGGGEEEESEEEEEEKQENESHHQATSKEYIAVGDFTAQQAG-----DLTFK 62
Query: 362 KTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEE 541
K E + K WI +N+ G I + Y E GQ+ S EE
Sbjct: 63 KREILLIIEKKPDGW------------WIAKNAKGNKGLIPRTYVEPYNKEEGQDTSEEE 110
Query: 542 VSQND 556
S+ D
Sbjct: 111 DSEED 115
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
(ORF2971) (ORFB)
Length = 2971
Score = 31.6 bits (70), Expect = 2.2
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +2
Query: 233 ESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEI 412
+S ++A +F N L +S++ YN++S NK L K ++S + + +
Sbjct: 435 DSESQEVATSFQNDL-ISIKYCFNNLYNYIS--NKTALS---TKNLFLFSAIKSNATKHK 488
Query: 413 RDQ--ISIENIKWIGQNSIGLLSNIKESLSA 499
R Q S+EN +G NS + + K S++A
Sbjct: 489 RTQSFFSVENTTTLGNNSNFVKGHFKSSINA 519
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,344,335
Number of Sequences: 369166
Number of extensions: 1519249
Number of successful extensions: 4912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4906
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)