Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_L18
(538 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 280 2e-75
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 280 2e-75
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 279 4e-75
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 278 5e-75
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 278 6e-75
sp|P80534|G3P1_JACOR Glyceraldehyde-3-phosphate dehydrogena... 277 1e-74
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 276 2e-74
sp|P04406|G3P2_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 274 9e-74
sp|P10096|G3P_BOVIN Glyceraldehyde-3-phosphate dehydrogenas... 274 9e-74
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 274 1e-73
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 280 bits (716), Expect = 2e-75
Identities = 133/178 (74%), Positives = 156/178 (87%)
Frame = +3
Query: 3 DVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWD 182
D+VA+NDPFI+L+YMVYMF+YDSTHGKFHG V+A++GKLV++G ++S++ +R+P I W
Sbjct: 27 DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGKSISIFQERDPANIKWG 86
Query: 183 HDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIV 362
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IV
Sbjct: 87 DAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSLKIV 145
Query: 363 SNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
SNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS K+WRDGRGAAQN
Sbjct: 146 SNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGAAQN 203
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 280 bits (716), Expect = 2e-75
Identities = 134/178 (75%), Positives = 155/178 (87%)
Frame = +3
Query: 3 DVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWD 182
D+VA+NDPFI+L YMVYMF+YDSTHGKFHG V+A++GKLV++G A++++ +R+P I W
Sbjct: 27 DIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWG 86
Query: 183 HDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIV 362
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IV
Sbjct: 87 DAGATYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSLKIV 145
Query: 363 SNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
SNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQN
Sbjct: 146 SNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQN 203
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 279 bits (713), Expect = 4e-75
Identities = 133/178 (74%), Positives = 155/178 (87%)
Frame = +3
Query: 3 DVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWD 182
D+VA+NDPFI+L+YMVYMF+YDSTHGKFHG V+A++GKLV++G ++++ +R+P I W
Sbjct: 27 DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGKPITIFQERDPANIKWG 86
Query: 183 HDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIV 362
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IV
Sbjct: 87 DAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSLKIV 145
Query: 363 SNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
SNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQN
Sbjct: 146 SNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQN 203
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 278 bits (712), Expect = 5e-75
Identities = 134/178 (75%), Positives = 154/178 (86%)
Frame = +3
Query: 3 DVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWD 182
DVVA+NDPFI+L YMVYMF+YDSTHGKFHG V+A++GKLV++G A++++ +R+P I W
Sbjct: 27 DVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWG 86
Query: 183 HDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIV 362
YVVESTGVFTT+EKA AH K AK+V+ISAPS DAPMFVMGVNHEKYD SL IV
Sbjct: 87 DAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSXDAPMFVMGVNHEKYDNSLKIV 145
Query: 363 SNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
SNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQN
Sbjct: 146 SNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQN 203
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 278 bits (711), Expect = 6e-75
Identities = 133/178 (74%), Positives = 155/178 (87%)
Frame = +3
Query: 3 DVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWD 182
D+VA+NDPFI+L YMVYMF+YDSTHGKFHG V+A++GKLV++G A++++ +R+P I W
Sbjct: 16 DIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWG 75
Query: 183 HDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIV 362
YVVESTGVFTT+EKA AH K AKKV+ISAPSADAPMFVMGVNHEKY+ +L IV
Sbjct: 76 DAGAEYVVESTGVFTTMEKAGAHLKGG-AKKVIISAPSADAPMFVMGVNHEKYNNTLKIV 134
Query: 363 SNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
SNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQN
Sbjct: 135 SNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQN 192
>sp|P80534|G3P1_JACOR Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 363
Score = 277 bits (709), Expect = 1e-74
Identities = 132/178 (74%), Positives = 156/178 (87%)
Frame = +3
Query: 3 DVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWD 182
D+VA+NDPFI+L+YMVYMFKYDSTHGKF G V+A++GKLV++GHA++++ +R+P +I W
Sbjct: 57 DIVAINDPFIDLNYMVYMFKYDSTHGKFKGTVKAENGKLVINGHAITIFQERDPSKIKWG 116
Query: 183 HDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIV 362
YVVESTGVFTT+EKA AH K AK+V+ISAPS DAPMFVMGVNHEKYD SL IV
Sbjct: 117 DAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSRDAPMFVMGVNHEKYDKSLKIV 175
Query: 363 SNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
SNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS+KLWRDG GAAQN
Sbjct: 176 SNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSAKLWRDGAGAAQN 233
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 276 bits (706), Expect = 2e-74
Identities = 133/177 (75%), Positives = 154/177 (87%)
Frame = +3
Query: 6 VVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 185
VVA+NDPFI+L+YMVYMFKYDSTHG F G V+A++GKLV++GHA++++ +R+P I W
Sbjct: 28 VVAINDPFIDLNYMVYMFKYDSTHGHFKGTVKAENGKLVINGHAITIFQERDPSNIKWAD 87
Query: 186 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 365
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDKSLKIVS 146
Query: 366 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
NASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQN
Sbjct: 147 NASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQN 203
>sp|P04406|G3P2_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH)
Length = 335
Score = 274 bits (701), Expect = 9e-74
Identities = 129/178 (72%), Positives = 156/178 (87%)
Frame = +3
Query: 3 DVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWD 182
D+VA+NDPFI+L+YMVYMF+YDSTHGKFHG V+A++GKLV++G+ ++++ +R+P +I W
Sbjct: 29 DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWG 88
Query: 183 HDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIV 362
YVVESTGVFTT+EKA AH + AK+V+ISAPSADAPMFVMGVNHEKYD SL I+
Sbjct: 89 DAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAPSADAPMFVMGVNHEKYDNSLKII 147
Query: 363 SNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
SNASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGA QN
Sbjct: 148 SNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQN 205
>sp|P10096|G3P_BOVIN Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 320
Score = 274 bits (701), Expect = 9e-74
Identities = 131/178 (73%), Positives = 155/178 (87%)
Frame = +3
Query: 3 DVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWD 182
D+VA+NDPFI+L YMVYMF+YDSTHGKF+G V+A++GKLV++G A++++ +R+P I W
Sbjct: 26 DIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKAENGKLVINGKAITIFQERDPANIKWG 85
Query: 183 HDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIV 362
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKY+ +L IV
Sbjct: 86 DAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYNNTLKIV 144
Query: 363 SNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
SNASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQN
Sbjct: 145 SNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQN 202
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 274 bits (700), Expect = 1e-73
Identities = 132/177 (74%), Positives = 154/177 (87%)
Frame = +3
Query: 6 VVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 185
VVA+NDPFI+L+YMVYMFKYDSTHG F G V+A++GKLV++G+A++++ +R+P I W
Sbjct: 28 VVAINDPFIDLNYMVYMFKYDSTHGHFKGTVKAENGKLVINGNAITIFQERDPSNIKWGD 87
Query: 186 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 365
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDKSLKIVS 146
Query: 366 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQN 536
NASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQN
Sbjct: 147 NASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQN 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,025,322
Number of Sequences: 369166
Number of extensions: 1343859
Number of successful extensions: 3502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3204
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)