Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_L12
(581 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41823|SY65_APLCA Synaptotagmin-1 (Synaptotagmin I) (p65) 114 1e-25
sp|P21521|SY65_DROME Synaptotagmin (p65) 104 2e-22
sp|P34693|SYT1_CAEEL Synaptotagmin-1 (Synaptotagmin I) 92 9e-19
sp|P47191|SYT1_CHICK Synaptotagmin-1 (Synaptotagmin I) (Syt... 91 2e-18
sp|Q60HC0|SYT1_MACFA Synaptotagmin-1 (Synaptotagmin I) (SytI) 91 3e-18
sp|P48018|SYT1_BOVIN Synaptotagmin-1 (Synaptotagmin I) (Syt... 91 3e-18
sp|P46096|SYT1_MOUSE Synaptotagmin-1 (Synaptotagmin I) (Syt... 91 3e-18
sp|P21579|SYT1_HUMAN Synaptotagmin-1 (Synaptotagmin I) (Syt... 91 3e-18
sp|Q5R4J5|SYT1_PONPY Synaptotagmin-1 (Synaptotagmin I) (SytI) 91 3e-18
sp|P29101|SYT2_RAT Synaptotagmin-2 (Synaptotagmin II) (SytII) 89 1e-17
>sp|P41823|SY65_APLCA Synaptotagmin-1 (Synaptotagmin I) (p65)
Length = 428
Score = 114 bits (286), Expect = 1e-25
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQEMPENN 178
LI+TVVDYDRIGTSEPIGR VLGCN++G ELRHWSDMLANPRRPIAQWHTLQE+PE N
Sbjct: 371 LIITVVDYDRIGTSEPIGRCVLGCNSSGTELRHWSDMLANPRRPIAQWHTLQEVPEKN 428
>sp|P21521|SY65_DROME Synaptotagmin (p65)
Length = 474
Score = 104 bits (259), Expect = 2e-22
Identities = 48/65 (73%), Positives = 54/65 (83%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQEMPENN*W 184
L+VTVVDYDRIGTSEPIGR +LGC TG ELRHWSDMLA+PRRPIAQWHTL++ E +
Sbjct: 410 LVVTVVDYDRIGTSEPIGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTLKDPEETDEI 469
Query: 185 TKNKK 199
KN K
Sbjct: 470 LKNMK 474
>sp|P34693|SYT1_CAEEL Synaptotagmin-1 (Synaptotagmin I)
Length = 441
Score = 92.0 bits (227), Expect = 9e-19
Identities = 40/66 (60%), Positives = 53/66 (80%)
Frame = +2
Query: 2 NLIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQEMPENN* 181
+L++TV+DYD++G+++ IGR +LGCN TGAELRHW DMLA+PRRPIAQWHTL + E
Sbjct: 376 SLMITVMDYDKLGSNDAIGRCLLGCNGTGAELRHWMDMLASPRRPIAQWHTLGPVEEEGD 435
Query: 182 WTKNKK 199
+KK
Sbjct: 436 KKDDKK 441
>sp|P47191|SYT1_CHICK Synaptotagmin-1 (Synaptotagmin I) (SytI) (p65)
Length = 424
Score = 91.3 bits (225), Expect = 2e-18
Identities = 39/56 (69%), Positives = 49/56 (87%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQEMPE 172
++VTV+DYD+IG ++ IG++ +G N+TGAELRHWSDMLANPRRPIAQWHTLQ E
Sbjct: 360 IVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQPEEE 415
>sp|Q60HC0|SYT1_MACFA Synaptotagmin-1 (Synaptotagmin I) (SytI)
Length = 419
Score = 90.5 bits (223), Expect = 3e-18
Identities = 38/52 (73%), Positives = 48/52 (92%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQ 160
++VTV+DYD+IG ++ IG++ +G N+TGAELRHWSDMLANPRRPIAQWHTLQ
Sbjct: 355 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 406
>sp|P48018|SYT1_BOVIN Synaptotagmin-1 (Synaptotagmin I) (SytI) (p65)
Length = 422
Score = 90.5 bits (223), Expect = 3e-18
Identities = 38/52 (73%), Positives = 48/52 (92%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQ 160
++VTV+DYD+IG ++ IG++ +G N+TGAELRHWSDMLANPRRPIAQWHTLQ
Sbjct: 358 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 409
>sp|P46096|SYT1_MOUSE Synaptotagmin-1 (Synaptotagmin I) (SytI) (p65)
Length = 421
Score = 90.5 bits (223), Expect = 3e-18
Identities = 38/52 (73%), Positives = 48/52 (92%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQ 160
++VTV+DYD+IG ++ IG++ +G N+TGAELRHWSDMLANPRRPIAQWHTLQ
Sbjct: 357 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 408
>sp|P21579|SYT1_HUMAN Synaptotagmin-1 (Synaptotagmin I) (SytI) (p65)
Length = 422
Score = 90.5 bits (223), Expect = 3e-18
Identities = 38/52 (73%), Positives = 48/52 (92%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQ 160
++VTV+DYD+IG ++ IG++ +G N+TGAELRHWSDMLANPRRPIAQWHTLQ
Sbjct: 358 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 409
>sp|Q5R4J5|SYT1_PONPY Synaptotagmin-1 (Synaptotagmin I) (SytI)
Length = 419
Score = 90.5 bits (223), Expect = 3e-18
Identities = 38/52 (73%), Positives = 48/52 (92%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQ 160
++VTV+DYD+IG ++ IG++ +G N+TGAELRHWSDMLANPRRPIAQWHTLQ
Sbjct: 355 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 406
>sp|P29101|SYT2_RAT Synaptotagmin-2 (Synaptotagmin II) (SytII)
Length = 422
Score = 88.6 bits (218), Expect = 1e-17
Identities = 38/56 (67%), Positives = 48/56 (85%)
Frame = +2
Query: 5 LIVTVVDYDRIGTSEPIGRIVLGCNATGAELRHWSDMLANPRRPIAQWHTLQEMPE 172
++VTV+DYD++G +E IG+I +G NATG ELRHWSDMLANPRRPIAQWH+L+ E
Sbjct: 358 VVVTVLDYDKLGKNEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEE 413
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,806,730
Number of Sequences: 369166
Number of extensions: 1337241
Number of successful extensions: 2777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2774
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)