Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_L06
(809 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 258 1e-68
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 256 5e-68
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 253 6e-67
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 251 2e-66
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 250 3e-66
sp|P55097|CATK_MOUSE Cathepsin K precursor 249 6e-66
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 249 6e-66
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 249 6e-66
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 249 8e-66
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 248 1e-65
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 258 bits (660), Expect = 1e-68
Identities = 138/266 (51%), Positives = 179/266 (67%), Gaps = 1/266 (0%)
Frame = +1
Query: 13 ITSVLLLFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQ 192
+T +LLL + L ++ + ++ N +W+ +K+ +++ Y + E RR +WE+N+R IQ
Sbjct: 1 MTPLLLLAVLCLGTALATPKFDQTFNAQWHQWKSTHRRLYGTNEEEWRRAVWEKNMRMIQ 60
Query: 193 HHNLEYDLGKHSYYLGVNEYADLTHEEFKIKFLGLKPIDRNYSRTIFMPPENMDNYPKSV 372
HN EY GKH + + +N + D+T+EEF+ G + R +F P M PK+V
Sbjct: 61 LHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHKKGR-LFQEPL-MLQIPKTV 118
Query: 373 DWRKKGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGC 552
DWR+KG VTPVKNQGQCGSCW+FS +G LEGQ F K +L+SLSEQ LVDCS D N GC
Sbjct: 119 DWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGC 178
Query: 553 NGGLMDNAFQYIQKY-GLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTK 729
NGGLMD AFQYI++ GL+SE YPY A DG CKY + VA+ TGFVDI + EK L K
Sbjct: 179 NGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGFVDIPQ-QEKALMK 237
Query: 730 AVATVGPISVAIDASRPSFQLYKGGI 807
AVATVGPISVA+DAS PS Q Y GI
Sbjct: 238 AVATVGPISVAMDASHPSLQFYSSGI 263
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 256 bits (654), Expect = 5e-68
Identities = 136/266 (51%), Positives = 176/266 (66%), Gaps = 1/266 (0%)
Frame = +1
Query: 13 ITSVLLLFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQ 192
++ VL F + + S+ KF N L+ +W +K +++ Y + E RR +WE+N++ I+
Sbjct: 3 LSLVLAAFCLGIASAVPKFDQN--LDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
Query: 193 HHNLEYDLGKHSYYLGVNEYADLTHEEFKIKFLGLKPIDRNYSRTIFMPPENMDNYPKSV 372
HN EY GKH + + +N + D+T+EEF+ + +G + +F P +D PKSV
Sbjct: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKSV 118
Query: 373 DWRKKGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGC 552
DWRKKGYVTPVKNQ QCGSCW+FS TGALEGQ FRK +LVSLSEQ LVDCS+ N GC
Sbjct: 119 DWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGC 178
Query: 553 NGGLMDNAFQYIQKY-GLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTK 729
NGG M AFQY+++ GL+SE YPY A+D CKY VA+ TGF + G EK L K
Sbjct: 179 NGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMK 238
Query: 730 AVATVGPISVAIDASRPSFQLYKGGI 807
AVATVGPISVA+DA SFQ YK GI
Sbjct: 239 AVATVGPISVAMDAGHSSFQFYKSGI 264
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 253 bits (645), Expect = 6e-67
Identities = 137/263 (52%), Positives = 176/263 (66%), Gaps = 1/263 (0%)
Frame = +1
Query: 22 VLLLFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHN 201
+LLL + L ++ + ++ + EW+ +K+ +++ Y + E RR IWE+N+R IQ HN
Sbjct: 4 LLLLAVLCLGTALATPKFDQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHN 63
Query: 202 LEYDLGKHSYYLGVNEYADLTHEEFKIKFLGLKPIDRNYSRTIFMPPENMDNYPKSVDWR 381
EY G+H + + +N + D+T+EEF+ G + R +F P M PKSVDWR
Sbjct: 64 GEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGR-LFQEPL-MLKIPKSVDWR 121
Query: 382 KKGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGG 561
+KG VTPVKNQGQCGSCW+FS +G LEGQ F K +L+SLSEQ LVDCS N GCNGG
Sbjct: 122 EKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGG 181
Query: 562 LMDNAFQYIQKY-GLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTKAVA 738
LMD AFQYI++ GL+SE YPY A DG CKY + VA+ TGFVDI + EK L KAVA
Sbjct: 182 LMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDIPQ-QEKALMKAVA 240
Query: 739 TVGPISVAIDASRPSFQLYKGGI 807
TVGPISVA+DAS PS Q Y GI
Sbjct: 241 TVGPISVAMDASHPSLQFYSSGI 263
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 251 bits (640), Expect = 2e-66
Identities = 137/265 (51%), Positives = 171/265 (64%), Gaps = 1/265 (0%)
Frame = +1
Query: 16 TSVLLLFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQH 195
T +L F + + S+ F + L +W +K + + Y E RR +WE+N++ I+
Sbjct: 4 TLILAAFCLGIASATLTF--DHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIEL 61
Query: 196 HNLEYDLGKHSYYLGVNEYADLTHEEFKIKFLGLKPIDRNYSRTIFMPPENMDNYPKSVD 375
HN EY GKHS+ + +N + D+T EEF+ G + + +F P + P+SVD
Sbjct: 62 HNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGK-VFQEPLFYEA-PRSVD 119
Query: 376 WRKKGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCN 555
WR+KGYVTPVKNQGQCGSCW+FS TGALEGQ FRK +L+SLSEQ LVDCS N GCN
Sbjct: 120 WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCN 179
Query: 556 GGLMDNAFQYIQ-KYGLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTKA 732
GGLMD AFQY+Q GL+SE YPY A + CKY+ VA+ TGFVDI K EK L KA
Sbjct: 180 GGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKA 238
Query: 733 VATVGPISVAIDASRPSFQLYKGGI 807
VATVGPISVAIDA SF YK GI
Sbjct: 239 VATVGPISVAIDAGHESFLFYKEGI 263
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 250 bits (639), Expect = 3e-66
Identities = 133/262 (50%), Positives = 170/262 (64%), Gaps = 3/262 (1%)
Frame = +1
Query: 31 LFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLE 207
L +LL +F E L+ +W L+K Y K Y S V E++RR+IWE+NL++I HNLE
Sbjct: 4 LKVLLLPVVSFALHPEEILDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLE 63
Query: 208 YDLGKHSYYLGVNEYADLTHEEFKIKFLGLK-PIDRNYSRTIFMPPENMDNYPKSVDWRK 384
LG H+Y L +N D+T EE K GLK P R++S P+ P S+D+RK
Sbjct: 64 ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRK 123
Query: 385 KGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGL 564
KGYVTPVKNQGQCGSCW+FS+ GALEGQ +K +L++LS Q LVDC +N GC GG
Sbjct: 124 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENYGCGGGY 181
Query: 565 MDNAFQYIQK-YGLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTKAVAT 741
M NAFQY+Q+ G++SE YPY D C Y+ T A C G+ +I +GNEK L +AVA
Sbjct: 182 MTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 241
Query: 742 VGPISVAIDASRPSFQLYKGGI 807
VGP+SVAIDAS SFQ Y G+
Sbjct: 242 VGPVSVAIDASLTSFQFYSKGV 263
>sp|P55097|CATK_MOUSE Cathepsin K precursor
Length = 329
Score = 249 bits (636), Expect = 6e-66
Identities = 132/259 (50%), Positives = 168/259 (64%), Gaps = 3/259 (1%)
Frame = +1
Query: 40 ILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLEYDL 216
+LL +F E L+ +W L+K +QK Y S V E++RR+IWE+NL+ I HNLE L
Sbjct: 7 LLLPMVSFALSPEEMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASL 66
Query: 217 GKHSYYLGVNEYADLTHEEFKIKFLGLK-PIDRNYSRTIFMPPENMDNYPKSVDWRKKGY 393
G H+Y L +N D+T EE K GL+ P R+YS PE P S+D+RKKGY
Sbjct: 67 GVHTYELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKGY 126
Query: 394 VTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDN 573
VTPVKNQGQCGSCW+FS+ GALEGQ +K +L++LS Q LVDC +N GC GG M
Sbjct: 127 VTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVT--ENYGCGGGYMTT 184
Query: 574 AFQYIQKY-GLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTKAVATVGP 750
AFQY+Q+ G++SE YPY D C Y++T A C G+ +I GNEK L +AVA VGP
Sbjct: 185 AFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGP 244
Query: 751 ISVAIDASRPSFQLYKGGI 807
ISV+IDAS SFQ Y G+
Sbjct: 245 ISVSIDASLASFQFYSRGV 263
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 249 bits (636), Expect = 6e-66
Identities = 133/262 (50%), Positives = 170/262 (64%), Gaps = 3/262 (1%)
Frame = +1
Query: 31 LFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLE 207
L +LL +F E L+ W L+K ++K Y + V E++RR+IWE+NL+YI HNLE
Sbjct: 4 LKVLLLPVVSFALYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLE 63
Query: 208 YDLGKHSYYLGVNEYADLTHEEFKIKFLGLK-PIDRNYSRTIFMPPENMDNYPKSVDWRK 384
LG H+Y L +N D+T EE K GLK P+ + S PE P SVD+RK
Sbjct: 64 ASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRK 123
Query: 385 KGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGL 564
KGYVTPVKNQGQCGSCW+FS+ GALEGQ +K +L++LS Q LVDC +N+GC GG
Sbjct: 124 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGY 181
Query: 565 MDNAFQYIQK-YGLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTKAVAT 741
M NAFQY+QK G++SE YPY + C Y+ T A C G+ +I +GNEK L +AVA
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 241
Query: 742 VGPISVAIDASRPSFQLYKGGI 807
VGP+SVAIDAS SFQ Y G+
Sbjct: 242 VGPVSVAIDASLTSFQFYSKGV 263
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 249 bits (636), Expect = 6e-66
Identities = 133/262 (50%), Positives = 170/262 (64%), Gaps = 3/262 (1%)
Frame = +1
Query: 31 LFTILLRSSAFKFQINEELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLE 207
L +LL +F E L+ W L+K ++K Y S V E++RR+IWE+NL+YI HNLE
Sbjct: 4 LKVLLLPVMSFALYPEEILDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLE 63
Query: 208 YDLGKHSYYLGVNEYADLTHEEFKIKFLGLK-PIDRNYSRTIFMPPENMDNYPKSVDWRK 384
LG H+Y L +N D+T+EE K GLK P + S P+ P SVD+RK
Sbjct: 64 ASLGVHTYELAMNHLGDMTNEEVVQKMTGLKVPASHSRSNDTLYIPDWEGRAPDSVDYRK 123
Query: 385 KGYVTPVKNQGQCGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGL 564
KGYVTPVKNQGQCGSCW+FS+ GALEGQ +K +L++LS Q LVDC +N+GC GG
Sbjct: 124 KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGY 181
Query: 565 MDNAFQYIQK-YGLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTKAVAT 741
M NAFQY+QK G++SE YPY + C Y+ T A C G+ +I +GNEK L +AVA
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 241
Query: 742 VGPISVAIDASRPSFQLYKGGI 807
VGP+SVAIDAS SFQ Y G+
Sbjct: 242 VGPVSVAIDASLTSFQFYSKGV 263
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 249 bits (635), Expect = 8e-66
Identities = 134/248 (54%), Positives = 166/248 (66%), Gaps = 2/248 (0%)
Frame = +1
Query: 70 QINEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNE 249
+++ L+ W+ +K +++ Y E RR +WE+N + I HN EY GKH++ + +N
Sbjct: 20 KLDPNLDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIIDLHNQEYSEGKHAFRMAMNA 79
Query: 250 YADLTHEEFKIKFLGLKPIDRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGS 429
+ D+T+EEF+ G + ++ +F P +D PKSVDW KKGYVTPVKNQGQCGS
Sbjct: 80 FGDMTNEEFRQVMNGFQN-QKHKKGKLFHEPLLVD-VPKSVDWTKKGYVTPVKNQGQCGS 137
Query: 430 CWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQ-KYGLE 606
CW+FS TGALEGQ FRK +LVSLSEQ LVDCS+ N GCNGGLMDNAFQYI+ GL+
Sbjct: 138 CWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMDNAFQYIKDNGGLD 197
Query: 607 SEADYPYTAMD-GPCKYDSTKVVAHCTGFVDIKKGNEKDLTKAVATVGPISVAIDASRPS 783
SE YPY A D C Y A+ TGFVDI + EK L KAVATVGPISVAIDA S
Sbjct: 198 SEESYPYLATDTNSCNYKPECSAANDTGFVDIPQ-REKALMKAVATVGPISVAIDAGHTS 256
Query: 784 FQLYKGGI 807
FQ YK GI
Sbjct: 257 FQFYKSGI 264
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 248 bits (634), Expect = 1e-65
Identities = 130/250 (52%), Positives = 168/250 (67%), Gaps = 9/250 (3%)
Frame = +1
Query: 85 LNDEWNLYKTRYQKSYLSIVELTRRI-IWEENLRYIQHHNLEYDLGKHSYYLGVNEYADL 261
+ +EW+ YK +++K+Y + VE R+ I+ EN I HN + GK SY LG+N+YAD+
Sbjct: 24 IKEEWHTYKLQHRKNYANEVEERFRMKIFNENRHKIAKHNQLFAQGKVSYKLGLNKYADM 83
Query: 262 THEEFKIKFLGLKPIDRNYSR-------TIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQ 420
H EFK G R R ++PP ++ PKSVDWR+ G VT VK+QG
Sbjct: 84 LHHEFKETMNGYNHTLRQLMRERTGLVGATYIPPAHV-TVPKSVDWREHGAVTGVKDQGH 142
Query: 421 CGSCWSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQ-KY 597
CGSCW+FS+TGALEGQHFRK LVSLSEQ LVDCS Y NNGCNGGLMDNAF+YI+
Sbjct: 143 CGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNG 202
Query: 598 GLESEADYPYTAMDGPCKYDSTKVVAHCTGFVDIKKGNEKDLTKAVATVGPISVAIDASR 777
G+++E YPY +D C ++ + A TGFVDI +G+E+ + KAVAT+GP+SVAIDAS
Sbjct: 203 GIDTEKSYPYEGIDDSCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAIDASH 262
Query: 778 PSFQLYKGGI 807
SFQLY G+
Sbjct: 263 ESFQLYSEGV 272
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,066,907
Number of Sequences: 369166
Number of extensions: 1844330
Number of successful extensions: 5528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5100
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)